Mycobacterium sp. JLS: Mjls_4624
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Entry
Mjls_4624 CDS
T00482
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mjl
Mycobacterium sp. JLS
Pathway
mjl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mjl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mjls_4624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjl03400
]
Mjls_4624
Enzymes [BR:
mjl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mjls_4624
DNA repair and recombination proteins [BR:
mjl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mjls_4624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABO00390
UniProt:
A0A5Q5CM65
LinkDB
All DBs
Position
complement(4854854..4858489)
Genome browser
AA seq
1211 aa
AA seq
DB search
MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG
PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH
PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD
MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV
PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD
LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS
GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA
TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN
LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG
GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR
RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV
TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH
KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV
AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD
AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS
AQLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ
IDTAKFGGSRA
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtatcggggcttcatcatgtccagaccccgattgcggggctcatcgagttggcg
ttgcgcgatccgtgtctggccgatctgtccgcacgcgccgccgacaaacccgacgatctc
gcgatggtgggtccggccagtgcccggctcctcgtcaccgccgcgctcgcgcaggccggc
ccgctgctcgtcgtcaccgccaccggccgggaggccgacgatctgaccgcggagttgcgc
ggggtgatcggcgactccgcggcgctgttcccgtcctgggagacgcttccgcacgagcgg
ttgtcacccggtgtggacaccgtcggcgcgcggatgatgctgttgcgccggctcgcgcat
cccgatgacgcccgcctcggcccgccgctgcgggtggtggtcaccacggcccgctcactg
gtgcagccgatggcgccgggtctggcagaggtcgagccggtgacgctgaccgtgggcgcc
gagatggatttcgacggcgtcatcaagcggctggtcgatctggcctacacgcgctgcgac
atggtggccaagcgtggcgagttcgcggtccgcggcggcatcctcgacgtgttcccgccg
accgccgaacatccggtgcgcgtcgagttctggggtgacgagatctccgagatgcggatg
ttcgccgtcgccgatcagcggtccatccccgagatcgaggtcgacaccgtcatcgcggtg
ccgtgccgcgagctgctgatgtccgacgaggtgagaagtcgtgctgccgtgctcgctgcg
gagcacccgacccacgagaactccgtgccgggcagcgtgcccgacatgctggccaaactc
gccgagggaatcccggtcgacgggatggaggcgctgctgccgctgttgcggccgaccgat
ttggcgatgctgtccgaccacctgccggacggcgcgccgatcctggtgtgcgatccggag
aaggtgcgcacccgcgccggggatctgatcaagaccggtcgggagttcctcgaggcgtcg
tggtcgacggccgccgtcggtggtgccgcgccgatcgacctggaggcgatgggcgcgtcg
ggcttcctcggtttcgaggaggtgcgcaccggcgcgcgggccggcggccacccgtggtgg
acgctgagccagctgtcggacgagaaggcgatcgaactcgacatccggtcggcgccgtcg
gcgcgcgggcagcagtcgtcggtcgaggagatcttcgcgatgctccgcgcgcacgtggcg
accggcggctacggcgcggtcgtcacccccggtgcgggcaccgcgcaccgcgtcgtcgag
cagctcggcgaaaacgacacgcccgcaacgatgctcgagcccggcgaggagccgaaggcc
ggtgtcgtcggggtgctgaaggggccgctgcacgacggggtggtgctgccgggcgcgaac
ctggtgatcgtcaccgaggccgatctgaccggcagccgcgtcaccgcgaccgagggcaaa
cgccttgccgccaaacggcgcaacgtcgtcgacccgctggccctgacggcgggggacctg
gtggtccacgatcagcacggcatcggccggttcgtcgagatgaccgaacgcgtcgtcggc
ggtgcgcgccgcgagtacctggtgctggagtacgcgtcgagtaaacgcgggggcgggtcc
gaccggctctacgtgccgatggactccctcgaccagctgtcgcgctacgtcggcggtgag
gcgccgtcgctgtccaaactcggcggcagcgactgggccaacaccaagaccaaggcgcgc
cgggccgtgcgggagatcgccagcgagctggtggcgctctacgccaaacggcaggccgcg
cccggccacgccttcagcccggacaccccgtggcagaacgagatggaggacgcgttcggg
ttcaccgagaccgtcgaccagctcaccgccatcgaggaggtcaaggccgatatggagaag
ccggtcccgatggaccgggtgatctgcggcgacgtcggttacggcaagaccgagatcgcg
gtgcgcgcggcgttcaaggcggtgcaggacggtaagcaggtggcggtgctcgtgccgacc
acgctgctggccgaccagcacctgcagacgttcaccgcgcggatggccggcttccctgtg
accgtgaaaggcctgtcgcgcttcaccgaccccgccgagtcccgcgccgcgctcgagggc
atgaaggacggctcggtcgacatcgtcatcggcacccaccgcctgctgcagaccggggtg
gtgtggaaggacctcgggctgatcatcgtcgacgaggaacagcggttcggcgtcgagcac
aaggagcacatcaaatcgatgcgcacccacgtcgacgtgctgaccatgagcgccacgccg
atcccgcgcacgctggagatgagcctggccggtatccgcgagatgtcgacgatcctcacg
ccgcccgaggagcgctacccggtgctgacctacgtcgggccgcaggacgacaaacaggtc
gccgcggcgctgcggcgcgaactgctgcgcgacgggcaggcgttctacatccacaaccgg
gtgcgcaccatcgatcaggcggcgtcgaagatcgccgcgctggtgcccgaggcccgggtc
gtcgtcgcccacggccagatgcccgaggaactgctggagcgcacggtcgaggggttctgg
aaccgcgagtacgacatcctcgtgtgcacgacgatcgtcgagaccggcctcgacatctcg
aacgccaacacgctgatcgtcgagcgcgccgacaccttcggcctgtcgcagctgcaccag
ctgcggggccgggtgggccgcagccgcgaacgcggatacgcctacttcctgtatccgccc
gagcagccgttgaccgagaccgcgtacgaccggctggccaccatcgcgcagaacaacgag
ctcggcgcgggtatggccgtggccatgaaggacctcgagatccgcggggcgggcaacgtg
ctcggcgccgaacagtccggtcacgtggccggggtcgggttcgacctctacgtgcgcctg
gtcggtgaggccgtcgaggcctatcgagcggccgccgacgggaaaaccgttgcgacaccg
caggaaacgaaggatgttcggatcgacctgccggtcgatgcgaacctgccgccggactac
atcggcagtgaccggctgcggctcgaggcctaccggcggctggccgccgcccaggacgac
gccggcgtcgacgcggtcatcgacgaactcgtcgaccgctacggaccgctgcccgaaccg
gcgcagcgcctggtcggcgtcgcgcggctgcggctggtgtgccgcgagtacggcatcacc
gacgtcagctcggtgtcggcgtcgacggtcaagctgtcgccgatggagctgccggactcg
gcgcagttgcggctcaagcggatgtatcccggggccacctaccgggcgacgaccgggacg
gtgtcggtgcccatcccgcgcgccaccgacagcgtcggcgcaccgcgcatccgggacgcc
gaactggtcgcgatggtggccggtttggttctcgcgctcaatggaaaaccgcaggcgcag
atcgatacggcgaagttcggggggtcacgagcatga
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integrated database retrieval system
