Mesobacillus jeotgali: FOF60_00335
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Entry
FOF60_00335 CDS
T08547
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mjo
Mesobacillus jeotgali
Pathway
mjo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mjo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOF60_00335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjo03400
]
FOF60_00335 (mfd)
Enzymes [BR:
mjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOF60_00335 (mfd)
DNA repair and recombination proteins [BR:
mjo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOF60_00335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
RecG_dom3_C
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UYZ22119
LinkDB
All DBs
Position
64261..67797
Genome browser
AA seq
1178 aa
AA seq
DB search
MQGLKALFSHQDDVQSVISGMDEGLREQLVAGLSGSARTVFLAAIYEQTKRPVLIVTHNL
LQAQKLYDDLANLIGENDVYLYPANELIAAEISISSPELKAQRIEALNHWSKKNTGIVIV
PMAGLRKLLPPKDLWAKFQLTFKLGEEIDLESVLNRFVSMGYVRAGMVAAPGEFSVRGGI
IDIYPLTSADPIRIELFDAEVDSIRTFSLEDQRSKEKMKTVAIGPATENPIESEQLDRLI
TGLEDGLSSSLKKLKDDKAKTLMAQNIGYELEQLRNGQIPDQLFKYLSIAYEKPQSLIDY
LPSKGFLFIDEISRVQEMNESLGKEEAEWYTSLLGEGQITHDLKISHQLPDLMSKAGKPI
VYLSLFLRHVPNTSPQNIINISCKQMQNFHGQMHVLKGEVDRWRKGNYAVIFLGPDAERV
KKLERVLEDYEIDAVKMDSKQKLLPGKVQIIQGSLNTGFEFPIQKIAVITEEELFNKKTK
KPARRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLVINGIHKDYLHIRYQGTD
KLYVPVEQIDLVQKYVGSEGKEPKVYKLGGSDWKRVKSKVQSSVQDIADDLIKLYAEREA
SVGHAFSPDGEMQRDFESSFPYQETEDQARSIHEIKLDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAFLVPTTILAQQHYETLRERFQDFPINIGLLSRFRTRKQQTETIK
GLKAGSVDIVVGTHRLLSKEITYRDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGGLVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTFAHGRMTENELESVMLGFLEGEYDVLVSTTIIETGVDI
PNVNTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKPEKDQVRKPT
IEIDLELDAYIPDSYISDGHQKIEMYKRFRGIESLKDIEELKEEIIDRFGDYPEEVETLF
EVAELKVYAIAAGVESIKMAKQDVTILLTEDGSSRIDGQKVFKLSSQYRNAVGLGMEGNK
LKMVVHTRGMKNDRWFNITFEMIKGLHDSQKEQENTVS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcaggggctgaaagctctatttagtcatcaggatgatgtccaatctgttatttccgga
atggatgaggggctcagggaacagctcgtcgcaggcctgtctggttcggcaaggacggtc
tttttggccgccatctacgagcagacgaagcgccccgtcctgatcgtgacacataattta
ttgcaagcgcaaaaactatatgacgatcttgcgaatttaataggggaaaatgatgtctat
ctttacccggcaaatgaattgattgccgcagaaataagtatttcaagtccagagctgaag
gcacagagaatagaggctctgaatcattggagcaaaaagaatacgggtattgtgattgtc
ccgatggctggcttgaggaagctgcttccgccaaaggatttgtgggcaaaattccagctg
acattcaagcttggcgaagaaatcgatctcgaatcggttctcaaccggtttgtcagcatg
ggatatgtcagggcgggaatggttgcggctcctggtgaattcagcgtgcgcggcggaatt
attgatatttacccgctgacatccgcagatccgatcaggattgagctgtttgatgcagag
gttgattcaatcaggacgttctcgcttgaggaccagcgttcaaaagaaaaaatgaaaaca
gtagcgatcgggccagcgacagaaaacccgattgagagtgaacagctggaccgtctgatt
acaggattggaagacgggctctcaagcagtttaaagaagctaaaggatgataaggcaaag
acattgatggctcaaaatattggctatgaattggaacagctccgcaatgggcaaatacct
gatcaactattcaagtacttatccatagcttatgaaaagcctcaaagtttaatagattac
ttgccgtcaaagggtttcctgttcattgatgaaatcagcagggtacaggaaatgaatgag
tcccttggcaaggaagaagcggaatggtatacgagcctcctcggcgaaggccagatcacc
catgatctgaaaatttcgcaccagctccctgacttgatgagtaaagctggaaaaccgatt
gtgtatttatccttatttttaaggcatgtaccaaacacaagtccgcagaacatcattaat
atatcctgtaagcagatgcagaatttccacgggcagatgcatgtgcttaaaggtgaagta
gatcgctggcggaaaggaaactatgcagttatattcctcgggccggatgccgaaagagtc
aaaaaacttgaacgcgttctggaagactatgaaatcgatgcggtaaaaatggacagcaag
cagaagctgcttccaggaaaagtccagattatccagggcagcctgaatacaggctttgaa
ttcccaatccaaaagattgccgtaattacagaagaggaacttttcaataaaaaaacaaag
aagcctgccagaagacaaaagctgtcgaatgcagagcggatcaagagctattcggaactt
aagatcggcgattatgttgttcacgtaaaccacggtattggtaaatacctaggcattgaa
acgctcgtaatcaatgggatccataaagattatctccatatccgctatcagggaacagat
aagctttacgtcccggtcgagcagattgaccttgtccaaaagtacgttggctcagaagga
aaagaacctaaggtctataagctcggcggtagcgactggaaacgggtcaagagcaaggtt
cagtcctctgtccaggatattgcggatgatttgatcaagctttacgcagagcgagaggct
agcgtcgggcatgctttctctcctgatggcgagatgcagcgtgattttgaatcttcattc
ccttatcaggaaacggaagatcaggctcgttccatccatgaaatcaaacttgatatggaa
cgtgaacgcccaatggaccgcctgctgtgcggagatgtcggctatggtaaaaccgaggtg
gcaatcagggctgccttcaaggcaatcgccgatggcaaacaggttgctttccttgtgcca
acgaccattcttgcgcagcagcattatgagacactcagggaaagatttcaggatttcccg
atcaatatcggattgctgagcaggttccgtacccgcaagcagcaaaccgagacgatcaaa
ggtcttaaagcgggcagtgtggatattgtcgttggaacacacaggcttttatccaaagaa
atcacctacagggaccttggcctgctgatcatagatgaagagcagcgctttggggttacg
cataaggagaagatcaagaagctaaaaacaaatgtggatgtcctgactttgacagcaaca
ccgattccaaggacactgcacatgtccatgctgggcgtcagagatttatcggtcatcgag
acaccgcctgagaaccgtttccccgtccagacatatgtcatggaatataacgggggactt
gtccgcgaggcgatcgaacgcgagctagccagggacggacaagtatatttcctctataac
cgtgtagaggatatcgagcggaaggctgaagaaatttccatgcttgtgcctgatgcgcgt
gtcacctttgcccatggccgcatgaccgaaaatgaactggaatccgtcatgcttggcttc
cttgaaggagaatatgatgtccttgtcagcaccaccatcatcgagactggtgtagatatt
ccgaatgttaatacactgattgtttatgatgcggataaaatgggcctatcccagctgtac
cagcttagaggaagggtagggcgctccaacagggttgcctatgcttactttacctaccga
aaagacaaggtcctcaccgaggtagctgaaaagcgtctccaggcaatcaaggagttcacg
gagctgggctctggtttcaaaattgccatgcgtgacctatcaatccgtggtgccggcaat
ctgttaggtgcccagcagcatgggtttattgattctgtcggttttgacctatattcccag
atgctgaaggaagcgattgaagaacgaaagccggaaaaagaccaagtccgcaagccaacg
attgaaatcgatcttgagctcgatgcctatataccggatagctatatttctgatggacac
cagaaaatcgagatgtataagcgctttcgcggtattgagtcattgaaggatattgaggaa
ttaaaagaagagatcattgatcgatttggagattatccagaagaagtagaaactttattt
gaagtggcagaattaaaggtatatgccattgccgcaggtgtggagtccattaaaatggct
aagcaggatgtgacgattcttttaacagaggatggaagcagccggattgacggacaaaag
gtatttaagcttagcagccagtacaggaatgcggtgggtctcggtatggaaggcaataag
ctgaagatggttgtccacactagaggaatgaaaaatgaccgttggttcaacattactttc
gagatgattaagggacttcatgactcccaaaaagaacaggaaaatacggtatcgtaa
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