Mesobacillus jeotgali: FOF60_13535
Help
Entry
FOF60_13535 CDS
T08547
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mjo
Mesobacillus jeotgali
Pathway
mjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOF60_13535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjo03019
]
FOF60_13535
03009 Ribosome biogenesis [BR:
mjo03009
]
FOF60_13535
Enzymes [BR:
mjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOF60_13535
Messenger RNA biogenesis [BR:
mjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOF60_13535
Ribosome biogenesis [BR:
mjo03009
]
Prokaryotic type
rRNA helicases
FOF60_13535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
RNA_pol_Rpb1_1
AAA_19
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
UYZ20110
LinkDB
All DBs
Position
complement(2663859..2665433)
Genome browser
AA seq
524 aa
AA seq
DB search
MNQFRSLGISELLAETLSQQGILEPTTIQEKAIPLLLDGKDVIAQSQTGTGKTFAFVLPI
LEKIDIEKPNIQALIVTPTRELALQITHEIKKLIEGYEGINVLAVYGGQDVESQLKKLKK
NIHIVIGTPGRLLDHIRRETVDFSNAAFLVLDEADQMLHIGFLNEVEEIIKQTPKTRQTL
LFSATMPDEIKRLAKQHMYKPEYIQVEKTQAPLENIKQIAISTTDRAKQNDLIESLRLYQ
PFLGVIFCRTKRRVSKLNDALKANHFNCDELHGDLSQAKREQVMKKFREAKIQYLIATDV
AARGLDVEGVTHVFNYDIPLDTESYIHRIGRTGRAGSEGLALTFYSPKDRPLLDQIETEL
NIKIEKKNMGNAKIAESHNEDYSAGSKRKQSSGEYKGKNTRSRRRDDQKPERDHRGEKIN
KAPASRRRTEDRREARYGEKGFRDRNQPSTRLEGRNSTEGLPSNPPRSEGRRMEKTPARA
GKETARRNSSERPNREIQGRDRRNSSSPGGRTAKRGGSSNRRSR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcaatttagatctttaggcatatcagaactactcgcagaaacgctcagccaacag
gggattttggagcccacaacaattcaggagaaagcaatacctttattgcttgatggtaag
gatgtcattgcacaatcccagacaggtactggtaaaacatttgcctttgtgctgccaatc
ctggagaaaatcgatatcgagaaaccaaatatacaagcattgattgtcacccctactagg
gaacttgcattgcagattacacatgaaatcaaaaaattaattgaaggatatgaaggtata
aatgttcttgctgtatatggaggtcaggatgttgaatcgcagctaaaaaagctaaagaaa
aacatccatattgtcatcgggactcccggaagattgcttgaccatatccgcagggaaacg
gttgatttttcaaatgcagcttttcttgtactggatgaagcggatcaaatgcttcacatc
ggtttcctgaacgaagttgaagaaattatcaaacaaactcccaaaacaaggcaaacctta
cttttttcagcgacaatgccagatgaaatcaaaaggctcgctaaacaacatatgtacaag
ccagaatatatccaggtcgagaaaacccaggccccgctggaaaacatcaaacaaattgcc
attagtacaacagacagggcaaaacaaaatgatttaattgagtcacttagattgtatcag
ccatttttaggagtcattttttgcaggactaaaagaagggtcagcaagttgaatgacgca
ttgaaagccaaccattttaattgtgatgagctgcatggagacctctcccaggcgaaaagg
gagcaggtgatgaaaaaatttcgtgaggcaaagatccagtatttaattgctacggatgta
gccgcaagagggcttgatgtagagggtgttacacatgtttttaattatgacatcccgctg
gatactgaaagctacatccatcgaatcggccgtactggcagggcaggcagtgaagggctg
gctctaacattttattcaccaaaagacaggcctttgctggaccagattgaaacagaactc
aatataaaaattgagaagaaaaacatggggaacgccaaaatagctgaatctcataatgaa
gattacagtgccggcagcaaaaggaaacaaagttctggtgaatacaagggaaagaatacc
cggtcgagaagacgggacgatcaaaaacctgaaagggatcaccgtggtgaaaaaataaat
aaagccccagcttcccgtagacggacagaagataggcgtgaagctcgttacggcgaaaag
ggctttagagataggaatcagccatcaacaaggcttgaaggaagaaactctacggaagga
cttccatcgaatcctcctcgttcagaaggaagaagaatggagaaaactccagcgcgtgca
ggcaaagaaacagcaagaagaaatagtagtgaaagaccaaaccgggaaatacaaggcaga
gatagacggaattccagctctcctggagggcgaacagccaagagaggcggttcaagtaac
cgcaggagcaggtag
DBGET
integrated database retrieval system
