Mesorhizobium jarvisii: EB229_01080
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Entry
EB229_01080 CDS
T06715
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mjr
Mesorhizobium jarvisii
Brite
KEGG Orthology (KO) [BR:
mjr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjr03019
]
EB229_01080 (hrpB)
Enzymes [BR:
mjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EB229_01080 (hrpB)
Messenger RNA biogenesis [BR:
mjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EB229_01080 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
HA2_N
AAA_22
DUF6630
AAA_19
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QKC61065
LinkDB
All DBs
Position
complement(227181..229643)
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AA seq
820 aa
AA seq
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MTTRSLPELPVSAVLPALSEALGAGNSAVLVAPPGAGKTTLVPLALLDAPCMGTGKIILL
EPRRLAARAAARRMAQLLDEEPGATVGYAMRMENRSSAKTRILVVTEGVLARMILDDPEL
PGVSAVIFDEFHERSLDGDFGLALALDVQGALRPDLRLLVMSATLDGARVAKLLSGAPVI
ESEGRAFPVDIGYDERPAGVPIEDAMAKAIRAALADESGSVLAFLPGQREIERTAERLAG
KVGADTDIVPLYGQLDGKAQDAAIKPAPAGRRKVVLATSIAETSITIDGVRVVIDSGLSR
LPRYEPASGLTRLETVRVSKASADQRAGRAGRTQAGVAIRLWRAEQTAALPAFTPPEILE
ADLSGLLLDCAAFGVADPTGLAFLDPPPAPALNEARVLLRALHAIDEAGRLTEAGASMRK
LALPVRLAHMVAEAARSGHAGEAAMLAVLLTERGLGGDGADLERRLMRFRGERSPRATAA
RQLAERLARQVGGTKNSEAAPAGSLLVNAWPDRVAKARGERGRFVLANGSGAILDAADPL
AGEPFLVVADLQGKAQNARIAAAAAISEDDIRATLADRIETRRQTSFDRERRAVRVRETV
RLGAITLAERMLPAPSGADADRAITDALREHGLSLLSWSKEAETLRQRLSWLHRGLGSPW
PDMSDEALIERLDDWLLPFLSGAASLAAIDPGVVSAGLASLVPHELQRKVDALAPTHFDA
PSGSHVPIRYDGEWPVLAVRVQELFGLDRHPSIANGTVPLTLELLSPAHRPIQTTRDLPG
FWRGSWADVRADMRGRYPKHVWPENPLLAAATARAKPRGT
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaagatccctgccggagcttccggtatccgccgtgctcccggcgctcagcgaa
gcgctcggtgccggcaacagcgccgtgctggtggcgccgcccggcgccggcaagacgacg
ctggtgccgctggcgctgctcgatgcgccgtgtatgggcacaggcaagatcatcctgctc
gaaccgcgccggctcgccgcccgcgccgccgcgcgccgcatggcgcaattgcttgacgag
gagccgggcgcgaccgtcggctatgccatgcgcatggaaaaccgcagctcggccaagacc
cgcatattggtcgtcaccgagggcgttctggcgcgcatgatcctcgacgatcccgaactg
cccggcgtctcggcggtgatcttcgacgaattccacgagcgttcgctcgacggcgatttt
ggcctcgcgctggcgctcgacgtgcaaggtgcgttgcggccggatctcaggctgctggtg
atgtcggcgacgctcgatggcgcgcgcgtcgcaaaactcctgtcgggcgcgcctgtgatc
gaaagcgagggccgcgctttccccgtcgatatcggctacgacgaacggccggccggcgtc
ccgatcgaggatgcgatggccaaggcgatccgcgccgcccttgccgatgagagcggcagc
gtgcttgccttcctgcccggccagcgcgagatcgagcgcaccgccgaacggctggccggc
aaggtcggcgccgacaccgacatcgtgccgctctatggccagctcgacggcaaggcgcag
gacgccgcgatcaagccggcgccggcgggccgccgcaaggtggtgctggcgacgtcgatt
gccgagacctccatcaccatcgacggcgtgcgcgtcgtcatcgattccggcctgtcgcgg
ctgccgcgctatgagccggcaagcggcctgacgcggctggagacggtgcgcgtcagcaag
gcctccgccgaccagcgcgccggccgcgccgggcgcacgcaagccggcgtcgccatccgg
ctatggcgcgctgaacagacggcggcactgcccgccttcacgccgcccgaaatcctcgaa
gcggacctttcaggcctgctgctcgactgtgccgccttcggtgtggccgatccgaccggc
ctcgctttcctcgatccgccgccggcgccggcgctcaacgaggcaagggtgctgctgcgc
gcgctccatgccatcgacgaggcggggcgcctgacggaagcgggcgcttcgatgcgcaag
ctcgctctgccggtgcggcttgcacatatggtcgccgaagctgcgcggagcggccatgcg
ggcgaggcggccatgctggcggtgctgctcaccgaacgcggccttggtggcgacggcgcc
gatctggagcggcggctgatgcgctttcggggggaaagatcgccccgcgccaccgccgcg
cggcaactcgcggagaggctggccaggcaggtgggtgggacgaaaaacagcgaagccgca
cccgcgggctctcttctcgtcaacgcctggccggaccgcgtcgccaaggcgcgtggcgag
cgcggccgcttcgtgctggccaatggctccggcgccatactcgatgccgccgacccgctg
gccggcgagccgtttctggtcgtcgccgacctgcagggcaaggcgcagaatgcccgcatc
gcggccgccgcggcaataagcgaggacgatatccgcgccacgctggccgaccggatcgaa
acacgccggcaaaccagtttcgatcgcgagcgtcgcgccgtgcgtgtgcgtgagacggtg
cgcctcggcgccatcacgctcgccgaacgcatgctgccggctccttcaggcgccgatgcc
gaccgcgccataacagatgcgttgcgcgagcacggcctgtcactgctgagctggagcaag
gaggccgagacgctgcgccagcggctgtcctggctgcatcgtggccttgggtccccctgg
cccgatatgtcggacgaagcgctgatcgagcgcctcgacgactggctgctgcccttcctg
tctggggcggcttccctggccgccatcgatcccggtgtcgtctcggctggcctcgcctcg
ctcgtgccgcacgaactgcagcgcaaggtcgatgcgctggcgccgacgcatttcgacgcc
ccgtccggcagccatgtgccgatccgctatgacggcgaatggcctgtgcttgcggtgcgc
gtgcaggaactgttcggcctggaccgccacccctcgattgccaacggcaccgtgccgctg
acgctcgaactcttgtcgccggcgcaccggccaatccagacgacgcgcgacctgcccggc
ttctggcgtggctcctgggccgacgtgcgcgccgacatgcgcgggcgctatcccaaacat
gtctggccggagaatccgctgcttgccgccgctaccgcccgtgccaagccacgcgggacc
tag
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