Mesorhizobium jarvisii: EB229_23465
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Entry
EB229_23465 CDS
T06715
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mjr
Mesorhizobium jarvisii
Pathway
mjr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EB229_23465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjr03019
]
EB229_23465
Enzymes [BR:
mjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EB229_23465
Messenger RNA biogenesis [BR:
mjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EB229_23465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QKC64908
LinkDB
All DBs
Position
complement(4747656..4749077)
Genome browser
AA seq
473 aa
AA seq
DB search
MTNENTLPGNDTAELFGFAALGITGALLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRAKTTRALILAPTRELAVQIEDTIKILAKGAHVST
ALVLGGVSRFSQVKKVAPGVDILIATPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGF
INDVKRIAKATAPDRQTALFSATMPDEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVF
ARTKQKRQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDG
RRPGGENKGNGFGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacacattgcccggcaacgataccgcggaactcttcggtttcgcagcg
ctgggaatcacgggtgcgctgctcaaggccacccacaatgccggattcaccgaaccgaag
ccgatccagatgcaggcaatcccgccccagctggaaggccgtgacattttcggcatcgcg
cagacgggctccggcaagaccgcggcctttgcgctgcctatcctgtcgaagatcatcgcg
ctcggcaccaagcggcgcgccaagacgacccgcgcgctcatcctggcgccgacccgcgag
ctcgccgtgcagatcgaggacaccatcaagatcctcgccaagggcgcgcatgtctcgacg
gcactcgtgctgggcggcgtctcgcgcttcagccaggtgaagaaggttgctcccggcgtc
gacatcctcattgctacgcccggccgattgaccgacctggtgcgcgagggcgacctcatc
ctctccgacaccaaatggctggtgctggacgagggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccaaggcgaccgcgcctgaccgccagacggcgctgttc
tcggccaccatgcctgacgagatcgccgaactggccaagggtcttctgaagaacccggtc
cgtatcgaagtctcgccgcaaagcaccgcggcggccgagattgtccagggcgtcgtcttc
gcccgcaccaagcagaagcgccaggttctgtcgacgatgctcgctgacgaggcgatgaag
tccgtcatcatcttttcgcgcaccaagcatggcgccgaccgggtgaccaaggacctcgag
cgcgatggcttcaaggcggccgtcatccatggcaacaagtcgcagaatgcccgtcagaag
gcgctgaacgattttcgcgatggatcggtccgcattctggtcgcgaccgacatcgcggcg
cgcggcatcgacgtccccggcatcagccatgtcgtgaatttcgacctgccggatgaggcg
gaaagctacgtccaccgcatcggccgcaccggccgcaacggcatggacggcatcgcgatc
acactttgcgatccttctgagaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aaactgccgatcgtcgccgaccatctcggcagccccgatccgcagcgcaatccggctgaa
aagaacgagcgcttcgagcccgccaatgatcgcaacgaccgcaatggccgtcgtgacggc
cggcggccgggcggcgaaaacaagggcaacggctttggcaagaagcggttcggcgacaag
ccggcctttgccggtgagcgcaagccggaaggcgccaagcccttcaagggcaacaacaag
cgccgtttcggcggcaagcgtccggcagcgcgggctgcttaa
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