Maniola jurtina (meadow brown): 123867432
Help
Entry
123867432 CDS
T09254
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123867432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123867432
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123867432
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
123867432
NCBI-ProteinID:
XP_045765415
LinkDB
All DBs
Position
8:complement(11151427..11173530)
Genome browser
AA seq
1091 aa
AA seq
DB search
MWTTKTFLTKTKRGNVLKIVREHYLRDDLLCGSAACNVCPQKDEDYVLEANPESICALFD
YNHYLVLDTNVVLHQIDVLEEDALKNVIILQTVLEEVKHQNTAIFQRLLEIIGNKKRKFY
SFVNEHHKDTYVERNPGEKQNDRNDRAIRKAAGWYSSHLSINNVAGQFPQIVLMTDDENN
RKIAQEEGIVCCSVKDYIENVNGFVGLVDKLSKNVIPESCTKDALYPAHLTPSQIHAGIR
NGKLHQGTFHASRDNFLEGTASVSGQEKPVLLQGHIGINRAIDGDIVAIEILPKEEWSKP
SDIVLEDKAEDPGDFLEDSTLIKPKVDTADDDITPTGKVVGIIKRKWRQYCGILLPSKFP
GATRHLFTPAEKRIPRVRIETRQSDILVSQRILVALDSWPRNSRYPLGHFVRSLGRIGDK
NAENEVILLEHDVPHARFSEAVLACLPPNDWTIPEEEIKKRVDLRSICVCSVDPPGCTDI
DDALHARALPTLTKDGLRKYDVGVHIADVTYFVRPNTALDKEAAARSTTVYLVDKRIDMV
PDLLSSNLCSLRGGEERLAFSCVWEIDENANVLSTKFHKSVIKSRAAMTYEEAQIAIDEK
SRNDEVAASLRTLNALAKKLKQKRLDNGALLLASPEIRFQVDSETHDPVEVQAKKIVDTN
SMVEEFMLLANVSVAEHLAAEFPQCALLRRHPAPPPANFHTFLKAARQQGFELDVSTNKA
FSKSLNEAVIPGRPYFNTLLRIMATRCMQQAVYFSSGTKTQDEFYHYGLACPIYTHFTSP
IRRYADVIVHRLLAACIGADVTHATLLDTKHADALCDNLNYRHRQAQYAGRASVALNTHI
LFKNREEIEAAVVLAVKRNALQVLIPKYGLEGPLYLPSDKFVYNEEENVQICGGTVLKTF
DELTVRLTLDSSNLQHRKLVFQLVTPYIPGVSYVKEKSQSTQESMDVEIVNITESVQSEK
KRKKKSKNIGDTEGEQKAVDVVRQSTVDTTESVLSEKKREKKPKNKDSQEDEKEAMDVEI
VNITESVSMEKKRQDTVDTKSKKKKCKNKDDSEDKQEATDVEIVDITGSDDSEKKKKQTV
DTKSKKKKSKK
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgacaaaaacatttcttactaaaacaaaacgcggcaatgttttgaagattgtt
agggagcattacttgcgtgatgacctactatgcggctcggctgcgtgtaacgtttgtccg
caaaaagacgaagactacgttttggaggcaaacccagaatctatctgtgccctatttgac
tataatcattatttagtgcttgatactaatgtggtattgcaccagatagatgtattagaa
gaagatgctttgaaaaatgtaataattttacaaacagtgctagaagaagtgaagcaccag
aatactgcaatatttcaaagattacttgagatcattgggaacaagaagaggaagttttac
tcctttgttaacgaacatcataaagatacatatgtggaacgaaatcctggtgaaaagcaa
aatgaccgcaatgacagagctattcgcaaagctgcggggtggtactcctctcatctctcc
attaacaatgttgctggacagttcccgcagatagtcttgatgactgatgatgagaacaac
aggaaaatcgctcaagaagagggtattgtgtgctgttcagtaaaggactacattgaaaat
gtgaatggttttgtgggactagtagacaagctgtcaaagaatgttataccagaaagttgc
actaaagatgccttgtacccagcgcatttgacaccgagtcagatccatgcaggcataagg
aacgggaaactgcaccaagggactttccatgcttctagggataacttcttggaagggaca
gcttctgttagtgggcaagagaaacctgttcttttacaaggtcatataggtataaacaga
gcgatagatggagacatagtggccatagaaatattgcccaaagaagagtggagcaaacct
agtgacatagttcttgaagacaaagcggaagatccaggagattttctagaagattccaca
ttgatcaaacctaaggttgatactgcagatgatgatataactcctacggggaaagttgtt
gggattatcaagaggaagtggagacagtactgcggtatattgctgcctagcaaatttcct
ggtgcaacgcgtcacttattcacgccagctgagaaacgtataccaagagtgcgcattgag
acgcgtcaaagcgacatactggtgtcgcaacggattctagttgcattggactcctggcct
aggaacagtcgataccctttgggccatttcgtaagatctttggggcgtattggcgacaag
aacgcggaaaacgaagtgatattactggaacacgacgttcctcatgcgcggttcagcgaa
gccgtgcttgcttgcttgccgcctaacgattggaccattcctgaggaggagataaaaaaa
cgcgtggatctccgttcgatatgcgtttgctcggtcgaccctcccggctgtaccgatatt
gatgacgctctgcacgcgcgggcgctgcccactctgaccaaagacggcctccggaagtac
gacgtgggagtccatatcgctgacgtcacgtacttcgtcagacctaatactgcgctggat
aaggaggcggcggcacgatcgacaactgtttatttggtcgataaaaggatagatatggtt
cctgatctgcttagttccaatctatgttcgttgcgcggcggcgaggagcgtttggcgttt
tcttgtgtttgggaaatcgatgaaaacgccaacgttttgtccaccaagttccacaaaagt
gtcataaagtctcgtgccgcgatgacgtacgaggaagcgcaaatagcgatagacgagaaa
tcgcgcaacgacgaagtagcggcctcgctgcgcactctcaacgcgctggccaagaaactg
aagcagaagcgcctcgacaacggcgccttgctgctcgcctcgcccgagatacggttccaa
gtggactctgaaacacacgacccggttgaagtgcaggcaaagaagatcgtagacacgaac
tcgatggtggaagagttcatgttactcgcgaacgtgagcgttgcagagcacttggcggcc
gaattcccgcaatgtgcgctgttgcgcaggcatcctgcacccccgcctgccaacttccac
actttcctcaaggccgctagacaacagggtttcgaattagacgtttcgacgaacaaagcc
ttctcaaaatccctgaacgaggcggtgatacccggccggccgtacttcaacacgctgctg
cgtataatggcgacgcgctgcatgcagcaagcggtgtacttctcgagcggcaccaagact
caagacgagttctatcactacggactggcgtgccccatttatacgcactttacctctcct
atacgaagatacgcagacgtcatagtgcaccggctgctggccgcgtgcatcggcgcagac
gtgacgcacgcaacactgctcgacaccaaacacgcggacgcactctgcgacaacctcaac
taccggcaccgacaggcgcagtacgccggccgcgcgtctgtggcgctcaacactcacatc
ttgttcaagaaccgtgaagagatcgaggcggcggtagtgctggcagttaaacgcaacgcg
ctgcaagtgttgattcccaagtacgggctcgagggaccgctctatttgccatccgataaa
tttgtctacaatgaagaggaaaacgtacagatatgcggcggcaccgtactcaaaaccttt
gacgaactcacagtgagactgactctcgacagttcaaatttacaacacagaaaactagtt
ttccaactagtaacaccgtacatacccggcgttagttacgttaaagagaaatcgcagagt
acacaagagtcaatggatgtcgaaattgtaaatataacggagagtgtccaatcggagaaa
aagagaaaaaagaaatctaaaaatataggtgacacagagggtgaacaaaaggcagtagac
gtcgtaaggcagtcgactgtagatactacggagagtgtcctatcggagaaaaagagagag
aagaaacctaaaaataaagatagccaagaggatgaaaaagaggcaatggacgtcgaaatt
gtaaatataactgaaagtgtgtcaatggagaaaaagagacaagatacagtagatactaag
agtaaaaagaagaaatgtaaaaacaaagacgactcagaggataaacaagaggcaacagac
gtcgaaatcgtagatataacggggagtgacgattcggagaagaagaaaaagcagacggta
gatactaagagtaaaaagaagaaatctaagaaataa
DBGET
integrated database retrieval system
