Maniola jurtina (meadow brown): 123868025
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Entry
123868025 CDS
T09254
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mju
Maniola jurtina (meadow brown)
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mju04147
]
123868025
00535 Proteoglycans [BR:
mju00535
]
123868025
00536 Glycosaminoglycan binding proteins [BR:
mju00536
]
123868025
Exosome [BR:
mju04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123868025
Proteoglycans [BR:
mju00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123868025
Glycosaminoglycan binding proteins [BR:
mju00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123868025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
123868025
NCBI-ProteinID:
XP_045766310
LinkDB
All DBs
Position
9:complement(9922066..10127706)
Genome browser
AA seq
1169 aa
AA seq
DB search
MECARLHSFLPRRLTFEYIWLALVISLTTCTANDGLFGSKYPNDIPEYDLLHAIGVPFSN
PKTQYFDEGLDGFPAYGLKPGSDIKSPYRLFMPEKLYAEFSITATVRPANKDGGFLFSVV
NPLETVVQLGVQLIPSGPGLTNISLLYTDANIYALSQTIASFVVPSFSKKWSRFALKVTS
DNVTLFLNCHEFDTLTVKRNPQELVFDSASTLYVGQAGPLIRGAFHGAFQELKLYGSPSQ
AEVQCVNTYEEVIQGGDNEEIDIDNFLVDQEEGDSEGSGRYGTIPPFPPPPPGLDGYPLR
LRGEKGERGPRGPPGESIRGPPGPPGPPGAPGQPGTTALAEMSGSGDDRNVVKQIFGENY
SSGGQCSCNSSVILSLLQTHPELQGPPGPPGMVGADGRTGAPGIAGQPGMPGERGPMGLR
GETGDRGDDGPRGPEGHSGPKGEPGVDGRPGSTGPPGPPGPPGTSDYSNFESNWKPRQIY
KESLLGSYGGAIGRPGAPGPKGDAGQPGPIGLQGERGFPGQKGERGYLGQTGPKGDRGYT
GTKGDRGIKGDRGTPGLDGRPGLPGANGRFGEKGEKGEQGIPGPPGPPALPVGVLASEES
EFLSAGRLQVTKGDKGEKGEKGSNGNDGTPGFPGKDGKNGERGDIGPSGMPGIAGPPGSP
GLKGDRGERGPPGPVSITSATGSDIMTIKGEKGEPGLRGRRGRPGPPGPRGPQGLQGIPG
KPGEKGDIGLPGWVNMKGRPGTLGPPGVPGLIGPKGEKGDPGINILDASMFKGEKGDRGY
DGTPGPKGAQGPPGPVGPPGPKSDPVQFVPGPPGPPGPPGPPGTPGISIVGPKGEPGVSF
VEEYPVHGSTKFYGKPVVKSPLDQLKEKALKELHDLKDRNKENPPSSSSESRAHHDESNS
NKNVLGAAVFPTTSDLMKLASTSPVGALAYVVEEQALFVKVNSGWQYVMLGSLVTQNIPV
TAAPTPATPPMPAASLVHMPPISNMIDNSIPMGPSLRLIALNEPLSGNMHGVRRADYACY
RQARRAGLKGTFRAFLTSRIQNLDATVRYADRHLPVINIQGDTLFKSFSDIFDGNGGTMV
GPLRIYSFSGKNIMMDSNWPQKLIWHGSHASGERALDTFCEEWQNGDPTSRGMAASLYSH
KLLSQERYPCNNHFAVLCIEATSHMKEIR
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtgctcgattacattccttcttaccacgtcgattgacttttgagtacatatgg
ctagcacttgtaataagtttgacgacgtgtacagccaatgacggcctttttggatcaaaa
tatccgaatgatatcccggaatacgacttgctgcacgcgatcggagttcctttcagcaat
ccaaagacccagtacttcgacgaaggcctcgacgggttcccggcgtatggacttaagcct
ggctccgatattaaatcaccctacaggctgttcatgcccgagaaactgtatgcggaattt
tcaataaccgccactgtgaggccggcgaacaaagatggcgggtttctcttctctgtagtc
aatccattagaaactgtggtccaattgggcgttcaattaataccttctggccccggactg
accaacatctctcttctatacaccgatgcgaatatatacgccctaagtcaaactattgca
tcctttgtcgtcccgtcattttctaagaaatggagtcgatttgcgttaaaggtcacaagt
gataatgtgactttgtttctgaattgtcatgagttcgatacattaacagtgaagaggaac
ccgcaagaattggtctttgactcggcatcgacgttgtatgtgggccaagctggaccactg
attcgaggtgcttttcatggtgcttttcaagagttgaagttgtacgggtcgccttctcaa
gctgaggtgcaatgtgtgaatacctatgaggaagtaatccaaggcggcgataacgaagag
attgatattgacaattttttggtggaccaagaagaaggtgactctgaaggctcgggaagg
tatgggaccatacctcccttccctcctccgccacccggcctggatggatacccgctgcgg
cttagaggtgaaaaaggagaacggggaccaaggggtccaccgggagagtcgatacggggg
cctcccggaccgccaggcccaccaggggctccaggccaaccaggcaccacggctcttgca
gaaatgtcaggatctggtgatgataggaatgtggtaaagcaaatcttcggtgagaactac
tcatcgggtggtcagtgcagctgcaactctagcgtcatactatcactactccagacccat
ccagagctacaaggtccacctggaccaccgggcatggttggagctgatggccgaactggg
gcaccaggtatcgctggtcagccaggaatgcctggagagcgtggacctatggggctgaga
ggtgaaacaggtgaccgaggagatgatggccctcgaggaccggaaggtcactctggtccc
aaaggtgaaccgggtgttgatggacgaccaggcagtactggtcctcccgggccccccgga
cctccaggaacatctgattatagtaattttgagtcgaattggaagccaagacaaatatac
aaggaatcattattgggatcctacggtggtgctattggaagaccaggggctccaggacct
aagggtgacgcaggccaaccaggacccatcgggttacaaggagagagaggattccctggc
caaaagggggagagaggttatctaggccaaaccggacctaaaggagaccgtggttatacg
gggaccaaaggtgaccgaggaataaaaggcgatcgtggtactccaggattggatggccga
cctggtcttccaggagccaatggacgattcggcgagaaaggggaaaagggtgaacaagga
atacccggtccaccaggccctccagctttgccagtaggcgtcctcgcttcagaagaatca
gagttcctatcagctggtcgactacaagtgaccaaaggcgataagggcgaaaagggcgaa
aaaggaagcaacggcaacgatggtactccaggatttcctggtaaagatggaaagaatggt
gaacgtggtgatattggaccttcgggaatgcccggtatcgcaggaccgcctggttcacca
ggcttgaaaggagacagaggtgaacgtggccctcccggtcctgtcagtatcacatcagct
accggctctgatattatgactatcaagggcgaaaaaggagaacctggcttaagaggtaga
agaggaaggccaggtccaccaggtccacgtggaccacagggtctgcagggtatacctggt
aaacctggtgagaaaggtgatattggcttgcccggatgggtgaatatgaagggtcgacct
ggaacattaggacctcctggagttccaggactcataggaccgaaaggcgaaaaaggcgat
ccaggaataaacattctagatgcttctatgttcaaaggtgaaaagggagatcgaggctac
gatggaacgcctggtccaaaaggggcccagggtccaccaggtcccgttggaccacctggc
cctaaatctgatccagtccagtttgtacccgggccacctggacctcctggtcctccagga
ccaccaggaactcctggaatatcaatcgtcggaccgaaaggtgaacccggcgtcagcttc
gttgaagaatatccggtacatggaagtacaaagttctatggcaaaccagttgtaaaaagt
cctttagaccaactgaaagaaaaggctctgaaagaattacatgatctgaaagatagaaat
aaagaaaatccaccttcatccagttcggagtccagagctcatcatgatgaatcgaacagt
aataaaaatgtattaggtgctgcagtattccctacgacttcagatttgatgaagctagcc
tcaacaagtcctgtgggtgcacttgcgtatgtcgtagaagaacaggctttattcgtcaaa
gtcaactcaggctggcagtatgttatgctgggatcactggtcactcaaaacataccagta
accgctgccccgactccagctaccccgccgatgcccgcagccagtctggtgcatatgcca
ccaatatcgaacatgatcgacaactccataccaatgggaccaagccttcgtctgatagct
ctaaacgagccgctatcgggcaacatgcacggcgtacgtcgagcggactatgcttgctac
agacaagcgcggcgagctggattgaaaggaacattcagggctttccttactagcagaatt
caaaacctcgatgcaactgttagatatgcggatagacacttgcctgtcataaatatacaa
ggtgatactctcttcaaatcgttctcagacatattcgacggcaacggtggaaccatggtg
ggacctttaagaatttacagtttcagtggaaaaaatattatgatggactcaaattggcct
caaaagttaatctggcacggctcgcatgcaagcggtgagagagcgctcgacaccttttgc
gaagagtggcaaaatggggacccaacgagtaggggcatggctgcctcgctttactcccat
aagctgctctcgcaagagaggtacccgtgcaacaaccatttcgcagtgctatgcatagaa
gccacatcacacatgaaagaaatacgttaa
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