Maniola jurtina (meadow brown): 123877625
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Entry
123877625 CDS
T09254
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123877625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123877625
03041 Spliceosome [BR:
mju03041
]
123877625
03009 Ribosome biogenesis [BR:
mju03009
]
123877625
03016 Transfer RNA biogenesis [BR:
mju03016
]
123877625
Enzymes [BR:
mju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123877625
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
123877625
Spliceosome [BR:
mju03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
123877625
Complex C
U4/U6.U5 tri-SnRNP related factors
123877625
Ribosome biogenesis [BR:
mju03009
]
Eukaryotic type
Pre-60S particles
Helicases
123877625
Transfer RNA biogenesis [BR:
mju03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
123877625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
123877625
NCBI-ProteinID:
XP_045780409
LinkDB
All DBs
Position
2:4782833..4798196
Genome browser
AA seq
1030 aa
AA seq
DB search
MADINSLFDCFDEPTQNESSIQLPNIKSVEESSVPEKSALISKKRPHEEVIYADTSKKVK
QDDEDIGEITSDINLDLLASRIVIHTLETHEGCTHEVAVPPNLEYSPLLPLTTEPAKQYS
FILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHTQPCHVVYTEYRPTPLQ
HYIFPAGGDGIHLVVDEKGQFKEDNFNTAMAVLSNAGEASKGDQRGRKGGMRGNTNTNIF
NIVKMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEED
RKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPART
VVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSVVKEMVQGK
ADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKAKQKEYDAL
TIEQEHSIASYCNVRSQLDLLGAQFRAFITRLEYLKPFLQPGRLVKVKTEKYEYDWGIIV
NFRHKTGKGKRGQNENPLTADTVIIVDILLHVKKSKPDDADPNAPCPPGEAGDVEVVPVL
HTLIYQISSLRVYYPKDLRPADNRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIEDSVFKE
CVDRIKVLEERLYAHPLHKDKNRGALTAAYDKKQEIYEELSQLKSELKKAKSILQMEELK
KRKRVLRRLGYCTLADVIELKGRIACELSSADELLLTELIFNGVFNSLSPEQSAALVSCF
VCDENSSQASATGDELKGVLRQLQEYARRIAKVSIDAKMDLDEDDYVGKFKCTLMDVVLS
WAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEGIKMLKR
DIIFAASLYM
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatcaatagtttatttgattgctttgatgaaccgacgcaaaatgaatcttct
attcagctacccaacatcaagagtgtagaggaatcttcggtgccagagaagtcagccttg
ataagcaaaaagcgtccacatgaagaagtaatatatgcagatacctcaaaaaaagttaaa
caggatgatgaagatatcggagaaatcaccagtgatataaacttagatctcctagcctca
agaatagtaatacatacactagaaacacacgaaggctgtacccatgaagttgcagtacca
ccaaacctcgagtattcacctctcttaccactcaccacggagcctgctaaacagtacagc
ttcatcctggatccatttcaaaaagaggcgattatgtgtatagataatctacagtcagtt
ttagtatctgctcatacatctgcagggaagactgttgttgctgaatatgcaatagcactt
tcgctaaagaacaagcagagggtaatatacactacaccaattaaggcactctccaatcag
aagtatcgggagttttctgaggagttccacgatgttggtctcatcactggtgatgtcaca
atcaatccatctgcgtcatgtcttattatgactacagagattctgcggaatatgttatac
agaggctctgaaattatgagggaagtcggatgggttgtgtttgatgagatccattacatg
agagacaaggagagaggagttgtgtgggaagaaacactgatcctcttgccggacaacgtg
cactacgtgtttctgtcggccaccatccccaacgcgcgccagttcgcggagtgggtgtgc
cgcctgcacacgcagccgtgccacgtggtgtacacggagtaccgccccactccgctgcag
cactacatattccccgccggcggtgatggtatccatcttgttgtggacgaaaagggccaa
ttcaaagaggacaacttcaacaccgctatggcagtgctaagcaacgccggggaggcgagc
aaaggggaccagcgcgggcgcaagggaggcatgcgcggcaacaccaacactaacatattc
aacatcgtgaagatgatcatggagaggaacttcgcgcccgtcatcatattcagcttcagc
aagaaggactgtgagctgtacgccatgcaaatggccaaactggactttaatacgattgag
gaaaagaagctagtggatgaagtattcaacaacgctatggatgtgttatccgaggaagac
cgcaagctaccccaagtagaaaatgtcattccgttattgagacgcggtattggcatacat
catggcggattactgcccatattgaaggagactattgaaatattgttcggcttgggactt
atcaaggcgcttttcgcgactgaaacattcgctatgggcctcaacatgcctgccaggaca
gtggtcttcactaactgtcaaaagtttgatggaaaagacttccgctttataacctcgggg
gagtacatccagatgtcgggacgcgcgggtcgtcgcgggctggacgacaagggcatcgtg
atactgatgatcgaccagaaggtgacccccagcgtcgtcaaggagatggtgcaaggcaag
gccgaccccatcaactccgccttccatctcacttataacatggttctaaatttgttgcga
gttgaggaaatcaatccagaatacatgttggaaagaagtttcttccagttccaaaaccaa
gcggccatcccagatcttatagacaaggtaaaggcgaagcagaaggaatacgacgcgctc
acaatagagcaggagcactcgatcgcttcgtactgcaacgtgcgttcgcagctcgacctg
ctgggcgcgcagttccgcgccttcatcacgcggctggagtacttgaagccgttcctacag
ccgggccgacttgtcaaggttaaaacagaaaagtacgagtacgactggggcataatcgtg
aattttaggcacaaaactggcaaaggaaaaagggggcagaacgaaaacccgctcacagca
gacacggtcatcatcgtcgatatactgctccatgtcaagaaatccaaaccagacgacgct
gaccccaacgcaccttgcccgccgggagaggcaggcgatgtagaagtagtaccagtcctt
cacacccttatataccagataagttcccttcgagtctactatcctaaggatctgcgaccg
gcggacaatcgcaaatccgtgctcaaaaccataggggaggtaaagaagcgattccccgaa
ggacctccgttgctaaatcctattaaggacatgaaaattgaggattcagtgttcaaggag
tgtgttgatagaataaaagttttagaagagagattatacgcccatcctttacataaagac
aaaaaccgcggcgcactaacagccgcatacgataagaaacaggaaatatacgaagaacta
tcccaacttaagtccgaactgaagaaagcgaaaagcatactgcagatggaagagttgaag
aaaagaaaacgtgttctacgtcgattaggatactgtacattagctgatgtcatagaacta
aaaggcagaatagcttgtgagttgagtagtgcggacgagttactgctaacggagctgatc
ttcaacggcgtgttcaactctctgagcccggagcagagcgcggcgctcgtcagctgcttc
gtgtgcgacgagaactccagccaggcctccgccaccggggacgaactgaaaggcgtcttg
aggcaactgcaggaatacgcgcgccgcattgccaaagtgtcgatcgacgccaaaatggac
ctagatgaggacgattacgtgggcaagttcaagtgtacgctgatggacgtggtgctgtcg
tgggctaagggagccagcttcttgcaaatttgtaaaatgactgacgtctttgaaggttca
ataatccgatgcatgcgtcgcttggaggaagtattgcggcagctgtgtcaggccgctaag
aacatcggcaacacggaccttgagaacaagttcagcgaagggatcaagatgttgaaacga
gatatcatcttcgctgctagtctctacatgtaa
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