Maniola jurtina (meadow brown): 123878821
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Entry
123878821 CDS
T09254
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123878821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mju03041
]
123878821
03009 Ribosome biogenesis [BR:
mju03009
]
123878821
Enzymes [BR:
mju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123878821
Spliceosome [BR:
mju03041
]
Complex A
U2 snRNP components
U2 related factors
123878821
Complex B
123878821
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123878821
Ribosome biogenesis [BR:
mju03009
]
Eukaryotic type
90S particles
Helicases
123878821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
AAA_7
T2SSE
AAA_25
TsaE
Motif
Other DBs
NCBI-GeneID:
123878821
NCBI-ProteinID:
XP_045782113
EnsemblRapid:
ENSMJUG00000007475
LinkDB
All DBs
Position
26:complement(374651..392466)
Genome browser
AA seq
735 aa
AA seq
DB search
MSKRRIEVMDPFIKKKREEKAAALAKAGGGGESSDSVATLGTAPPPTATSTPGVNPYTGL
PHSTRYHELLRRRLGLPVWEYKNDFMRLLSTHQCVVLVGETGSGKTTQIPQWCVEFSAVT
AGKSHGVACTQPRRVAAMSVAQRVAEEMDVALGQQVGYSIRFEDCSGPQTVLKYMTDGML
LREAMSDPMLEQYRVILLDEAHERTLATDILMGVLKEVIKQRTDLKLVIMSATLDAGKFQ
QYFDNAPLMNVPGRTHPVEIFYTPQPERDYLEAAIRTVIQIHICEEIPGDILLFLTGQEE
IEDACKRIKREIDNLGPDVGELKCIPLYSTLPPNLQQRIFEPAPPNRANGAIGRKVVVST
NIAETSLTIDGVVFVIDTGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKC
FRLYTEKAYKNEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGNLTDLGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFV
RPNEARKAADEAKMRFAHIDGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVR
QQLSRIMDRFNLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLRIAPQYYELNNFPQCEARRQLE
LLQARLDSKAYQEGF
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgaaggattgaagtgatggatcctttcatcaagaaaaagagagaagaaaag
gcggcagcgttagcgaaggcggggggcggcggggagtcgtcggactccgtggccacgctg
gggactgcgcccccgcccaccgccaccagcaccccgggggttaatccctacacaggtctc
ccccactcgacgcgttaccatgaactcttacgccgtcgactcggactccctgtatgggaa
tacaaaaacgatttcatgagactcctcagcacacaccaatgtgtggtcttagtcggtgag
accggttctggaaaaaccacccaaatcccacaatggtgtgtggaattttccgctgtaacc
gctggaaagtctcacggagtagcctgcacccaacctagaagagtagcagccatgtccgta
gctcaacgagttgctgaagaaatggatgttgctttaggccagcaagttggttacagcatc
cgtttcgaagactgttcgggaccacaaacagtactaaaatacatgacagatggtatgtta
ctccgtgaagccatgtctgacccgatgttggagcaataccgagtgattttacttgacgaa
gctcacgaaaggacgttagctacggacatacttatgggtgtactgaaggaggttattaaa
caacgtacagacttgaagctagttattatgtctgcgactttagatgcagggaagtttcaa
cagtatttcgataatgctccattaatgaacgttcctggtagaacacatcctgtcgaaata
ttttacacacctcagcccgaaagagattatttagaagcagccattcgtacagtaatccaa
atacatatttgtgaggaaattcccggtgatattttactgtttttgactggacaggaagaa
attgaggatgcttgtaaaagaattaagcgtgaaattgataatttgggaccagatgtgggt
gaacttaaatgtataccgttatattcaactttaccaccgaatttgcagcaaaggatcttt
gaaccggcacctcctaatcgagctaatggagcaattggtagaaaagttgtagtttcaact
aatatagcagaaacatcattgacaatagatggtgtagtatttgtcatagatactggattt
tcaaaacaaaaggtgtacaaccctaggattcgtgtggagtctctattggtgtcgcctatt
agtaaggcctcggctcagcagagagctggcagggctggcaggacgcgtccagggaaatgc
ttcaggctttatacagaaaaggcatacaagaatgaaatgcaagataatacctatccggag
attttgagatcaaacttaggatctgtagttttgcagttgaaaaagctgggtatcgacgac
ctggtgcactttgacttcatggacccgccagctccggagaccctgatgcgcgcgcttgag
ttgctcaattacttggctgcactggatgatgacggtaacctgacagacctgggcgcagtg
atggcggagttccccctcgaccctcagctcgccaagatgctgatcgccagctgcaaccac
aactgctccaacgagatcctctccatcactgccatgctgtccgtgccgcaatgcttcgtg
cgtcctaacgaagcgcgcaaggcggcggacgaagcgaagatgcgcttcgcccacatcgac
ggcgaccacctcacgcttctcaatgtgtaccacgctttcaaacagaatatggaggacccg
cactggtgttatgataacttcatcaactacagatcgctgaagtccggagacaacgtgcgg
cagcaactcagccggattatggacagatttaacctaaaaagaacaagtacagagttcacg
agcaaagactactacattaatattaggaaagcacttgtcaacggattctttatgcaggtg
gcccacttggagcggacgggccactatctcacagtgaaagacaaccaagtggtccagctg
cacccctccacctgcctcgaccacaagcccgactgggtcatctacaatgagttcgtgctg
accaccaaaaactatatacgcactgtcaccgacatcaaaccggaatggctgctccggatc
gcccctcagtactacgagctcaacaacttcccgcagtgcgaggcgaggcgacagctggag
ctgctgcaggcgcgcctcgactccaaggcctaccaggagggcttttag
DBGET
integrated database retrieval system
