Maniola jurtina (meadow brown): 123880907
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Entry
123880907 CDS
T09254
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123880907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123880907
03041 Spliceosome [BR:
mju03041
]
123880907
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123880907
Spliceosome [BR:
mju03041
]
Complex B
Other components
Prp19-related factors
123880907
Complex C
123880907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
DHR-2_Lobe_A
TPR_10
ARM_TT21
Mad3_BUB1_I
NRDE-2
ARM_TT21_C
PPR
TPR_IF140_C
Motif
Other DBs
NCBI-GeneID:
123880907
NCBI-ProteinID:
XP_045785270
LinkDB
All DBs
Position
1:complement(4770998..4793439)
Genome browser
AA seq
844 aa
AA seq
DB search
MPTLDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKGAPKHEINMIYERALKEL
PGSFKLWYNYLKIRRSQIRGRCITDPAYDDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITITRKAFDSALRALPITQHHRIWPLYLNFLKKHNIPETAVRVFRRYLKLCPEDTEEYI
DYLIAIEKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDKIHTLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKVSPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIDDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIKHENYEEALKLMQKATVLPSRKVAYHDDNETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLQDGK
AREMCIRFAEMETRLGEIDRARAIYAHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NILFVRGETQGLKESDKVVNPDEIDIDDEQSEHSGDDDEEEEVAPVQKKEIPAAVFGGLL
PEKE
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcctacgcttgatggaaaagaaatcgatatttttttctctgaagaagatttaccttat
gaagaagagatattaaggaatccattctcagtaaaacattggctcagatacatagaacat
aaaaaaggagcacctaaacatgaaattaatatgatctatgagagagctcttaaagaatta
ccaggctcctttaaactatggtataattatcttaaaatacgaagatcccaaattaggggt
cgctgtataacagatcctgcctatgatgatgtaaataattgttttgaaaggtcactcgtt
ttcatgcacaagatgcccagaatatggatggattactgcacttttctaacagatcaatgt
aaaataactataactagaaaagcatttgatagcgctttaagagctttgcctattacacag
catcatagaatttggccactttatctgaattttttgaaaaaacacaatatcccagaaaca
gcagtgagagtattcagaaggtacctcaagctatgtcctgaagacacagaagaatatatt
gattatttaattgcaatagaaaagttagatgaagctgcagtgaaattggctcaacttgtc
aacaatgaaaattttcagtccaagcatggaaaatcaaatcatcaactttggaatgaacta
tgtgaattaatatctaaaaatccagacaaaattcacaccctaaatgttgatgccataata
agaggtggactcagacgatatactgaccaattaggacacctgtggaactctttagcagac
tactatgtaaggagtggtctatttgaaagagcaagagatatttatgaagaagctatacaa
actgtcaccactgttagagattttactcaggtttttgatgcatatgcacaatttgaggaa
cttagcttaagtaaaaaaatggaagaagttgcaaaaaaggttagtcctactgaagatgat
gacattgatttagaacttagactagcaaggtttgaatatttaatggaaagaagattgtta
cttctcaattctgttcttttaagacaaaatccacataatgtagctgaatggcacaaaaga
gtaaaactttatgaaggaaaacctcatgaaattatagatacatacacggaagcagtgcaa
actgtggatccaaaattagctgtaggaaagctttacaccctttgggttgggtttgccaaa
ttttatgaaagcaatgatcaaattgatgatgcaagattgattttcgaaaaagcaacacaa
gttaattatgcaaaagttgatgatctagcttcagtgtggtgcgagtgggcagaaatggaa
ataaaacatgaaaactatgaagaagccttaaagttaatgcaaaaagctacagtattgcca
agcagaaaagtagcttatcatgatgataatgagacagtgcaaatgcgtttatacaagtct
ctgaaggtatggtccatgtatgctgatttagaagaaagttttggaacatataaatcctgc
aaagctgtttatgaccacataatagatttaaaaatagccacaccacaaattattattaat
tatggtctatttttagaagaacacaactattttgaagaagctttcagagcatatgaaaaa
ggaatagcacttttcaaatggccaaatgtatatgatatttggaacacatatttgaccaag
tttttaaagagatatggaggttcaaaactggaaagggctagagatttatttgaacagtgc
ctagaacactgcccaccagaatttgcaaagtcaatatttcttttatatgccaaactagaa
gaggaacatggtttagctagacacgccatgtctgtttatgaacgagcaacaacagcagtc
ttaccagaacaaatgtttgagatgtttaatatttacataaagaaagcagctgagatatat
ggggtgccaaaaacacgacaaatatatgagaaagcaattgaaacccttcaagatggtaag
gctagagaaatgtgtataagatttgcagaaatggaaactcgccttggtgaaattgacagg
gctcgagcgatatatgcacattgcagccaaatgtgtgacccccgaatcactgcagaattt
tggaacacatggaaagaattcgaagttagacatggaaatgaggacacaatgcgtgaaatg
cttagaattaagaggagtgtacaagctacatataacactcaagtgaacatgatgtcagcc
cagatgttgagttcagcagcacaagcagctggcactgtgtctgatctcgctcctggaatg
aaagatggcatgagaatgctcgaggccaaagctgcagaaatggctgtacaaagcaaaggt
aacatattatttgttaggggtgaaactcaaggtcttaaagaatctgataaggtggtaaat
cctgacgaaattgatattgatgatgaacaatccgaacacagtggtgatgatgatgaagag
gaagaagttgcacctgtacagaaaaaagaaatccctgctgctgtttttggaggattgcta
cctgaaaaggaataa
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