Maniola jurtina (meadow brown): 123881115
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Entry
123881115 CDS
T09254
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123881115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mju03041
]
123881115
Enzymes [BR:
mju01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123881115
Spliceosome [BR:
mju03041
]
Complex C
Other components
Step II factors
123881115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
nSTAND3
AAA_30
nSTAND_NTPase5
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
123881115
NCBI-ProteinID:
XP_045785656
LinkDB
All DBs
Position
3:1758886..1767676
Genome browser
AA seq
1323 aa
AA seq
DB search
MDEVAKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLADKNPTFDNFKKALVDNGAEFS
DSFMTNLLRIIQHMKPIGSESEKSDQNNKSSHPLAAKFPGLAIPNDKPATFSSDDEGEEE
AKDDQKNKRITSKDIFKNESKTKELCSVVDDAMAALEALAPSKSGTKDESKHDVKKREHS
QDRKDGKKDSTVNKKRRSRSKDRSKSRERDKRSHSREKKRVRSHSRDRERSRSRDRDRKR
SRSRQRHRSRSRDRSRRSKDRSRSKDRSRRSKDRSRSRGRSRRSKDRSRSRDRSRRSKDR
SRHSQSRDRSKRSRSRDRYKGGRAKHRKSRSHSRDREVKNRYRDNDYERKPLRKKSPDVE
ISDDPEPGKIYSGRVANIVPFGCFVQMEGLRKRWEGLVHISQLRSEGRVTNVSDVVSRGD
KVKVKVLSVTGQKVSLTMKDVCQETGKDLNPASHAHLEAEREGRNPDRPPPAATVLAGLQ
SGIDPDEDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDGEADIE
IELVEEEPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMLQREQEM
ESLPTGLNKNWIDPLPEADGRTLAANMRGTGIAPQDLPEWKKHVIGGKKSSFGKKTNLSL
LEQRQSLPIYKLRDELTKAISDNQILIVIGETGSGKTTQITQYVCECGLAARGRVACTQP
RRVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTGPDTVIKYMTDGMLLRECLMDLDLKS
YSVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIP
GRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMK
SLGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPG
FVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVP
EIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGLLTRLGR
RMAEFPLEPNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQP
EGDHLTLLAVYNSWKNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGK
NTVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTT
KEYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRR
RRN
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggttgcaaaattagagcacctctctcttgtgtctaagatttgtacagaattg
gataaccacttgggcttgaatgacaaagatctagctgaatttatcatcgacttagcagac
aaaaatccaaccttcgacaactttaaaaaggctttagtcgacaatggagcggaattctcg
gactcgtttatgacgaatttgcttcgtataattcagcatatgaagcctattggtagtgaa
agcgagaaaagtgatcagaacaataaatcatcgcaccctttggctgcaaagtttccgggc
ttggccatacctaatgacaaacctgcaacattctcttcagatgatgaaggtgaagaagag
gcaaaggatgatcaaaaaaacaaaagaatcacatcaaaggatatatttaaaaatgagtca
aaaacaaaagaattgtgtagtgtggttgatgatgcaatggctgcattagaggctttagcc
ccttcaaaaagtggtacaaaagatgagtcaaagcatgacgttaagaaaagagaacacagt
caagatagaaaagacggtaagaaagatagcacagtaaataagaaaaggcgaagcaggagt
aaagatagaagtaaaagcagagaaagagataaaaggagtcatagtagggagaaaaaaaga
gttaggagtcatagcagagatagagaaaggagccggagtagagacagagatagaaaaaga
tctagaagtcgtcagcgccacagatctaggtcaagagataggtctagaaggtctaaggac
agatctaggtctaaagataggtctagaaggtcaaaagacagatctaggtccagaggtagg
tccagaaggtcaaaggacaggtccaggtcaagagataggtctagacggtcaaaggacaga
tccaggcattcacagtcaagagacaggtctaaaaggtcacggtcaagagacaggtataag
ggaggcagggcaaagcacaggaagtctaggtctcattctcgggacagagaagtcaagaat
aggtacagggataatgattatgaaaggaagcctctaaggaagaagagtccagatgtggag
atcagcgatgatccagagccaggaaagatatacagcggacgagtggccaacatagtgccg
tttggatgttttgtacaaatggagggcttgaggaagagatgggaaggtctggtccacatc
tcacagctcaggtcagagggcagggtcaccaatgtgtctgatgtggtctctagaggagac
aaggtcaaggttaaagttctgtctgtgactggacaaaaagtgtcgcttacaatgaaggat
gtttgccaagaaactggcaaggacttgaacccagcatctcatgcacacttggaggctgaa
cgtgaaggtcgcaacccggacaggcctccgcccgcggccacggtgctggcggggctgcag
agcggcatcgaccctgacgaggactccagccggaagcgagtcacgaggatctccagcccc
gagagatgggagattaaacagatgatatcatcaggggtgatcgacaagagtgagctacca
gatttcgacgaagaaaccggcctcctgcccaaggacgaagatggcgaagcggatattgag
attgaactcgtggaagaggaacctcccttcctgcaaggccacgggagagcgttacacgac
ctgtcgcctgtgaggatcgtgaagaaccctgatgggtcgttggcacaagcggccatgatg
cagtctgccttagccaaggaaaggcgggaacagaaaatgctgcaaagggaacaagagatg
gagagtctaccaactggcttgaacaaaaactggatagatcccttacccgaggcagatggc
aggaccctcgcagccaacatgaggggcaccgggatagctcctcaggacctgccggagtgg
aagaagcatgtgattggaggcaagaagtcatcctttggcaagaagaccaacttgtctttg
ttggagcagagacaatcgctgcctatttacaagttgagggatgagttgactaaggcgata
tcagacaaccaaatcctgatcgtgattggtgagactggatccggaaagacgactcaaata
acgcagtacgtgtgcgagtgcgggctggcggcgcgcgggcgcgtggcgtgcacgcagccg
cgccgcgtggccgccatgtccgtcgccaagcgagtcgccgaggagttcggctgcagattg
ggccaggaagtcgggtataccattcgttttgaggactgcacgggacctgatactgttatc
aagtacatgacagacggtatgttgcttcgcgaatgcctaatggatctagatctcaaaagc
tattccgtcatcatgttggacgaagctcacgaaagaaccattcacacagacgtgctattc
ggcctcctcaaacaagccgtgcaaaagaggcctgagctcaaactcatagtcacctcagct
acattagacgctgtgaaattctcccaatacttctttgaagcgcctatttttaccatacct
ggtagaactttccctgtagaagtcttgtatactaaggaacctgagacggattatttggac
gcgtctttgatcacggtgatgcaaatacatttgcgggaacctccgggggatatactcttg
tttttgaccggtcaagaggagatcgataccgcgtgcgagattttgtacgaaagaatgaag
tctttaggacctgatgtaccagaactaataattctgccggtgtattctgcgttgccgtcc
gaaatgcagacaaggatcttcgagccggcgccgcctgggtctaggaaggtggtgatagcc
actaacatagcagagacgtcgctaacgatagacggaatctactacgtggtggatccaggg
ttcgtgaagcagaaggtgtacaattcaaagactgggatggattcgttggttgtcactccg
atatcacaagcagcggcaaagcagcgagctggtcgcgcgggccgcaccgggccgggcaaa
acgtaccgcctgtacacggagcgcgcgtaccgcgacgagatgctgcccacacccgtgccc
gagatacagcgaaccaacctcgctactactgtgctacaactgaaaactatgggcatcaac
gatctgctacactttgacttcatggacgcgccgccggtggagtccctcataatggcacta
gaacagctgcactcgctctctgcactggattccgaggggctgcttacacgactggggcga
cggatggcggaattccccctggagccgaacctgtcgaagatcctcatcatgtcggtagcg
ttgcagtgctccgacgagatcctcaccatcgtgtcgatgctcagcgtgcagaacgtgttc
taccggcccaaggacaagcaagctctggccgaccagaagaaggccaagttcaaccaacct
gaaggtgaccatctgaccctactggccgtgtacaacagctggaagaacaacaagttctcc
aacgcctggtgctacgagaacttcgtgcagatcagaactctgaagcgcgcgcaagatgtg
cgtaaacagctgctcggcattatggacaggcataaacttgacgtggtgtcagcgggtaag
aatacggtgcgcatccagaaaacgatctgttcgggcttcttccgcaatgctgccaagaag
gacccgcaagaggggtaccgcacactcgtcgacagccaagtggtctacatacacccctcc
agcgcgctgttcaacaggcaaccggaatgggttatttaccacgagttggtgcaaaccacc
aaggagtacatgcgagaagtgaccacaatagaccctaaatggctggtggagttcgcaccc
gcctttttcaagttctccgaccccaccaaactgtccaaattcaagaagaaccagagatta
gaacctttgtacaataagtacgaagaacctaacgcctggagaatatccagagtccgaaga
cgtagaaattag
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