Manis javanica (Malayan pangolin): 108385077
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Entry
108385077 CDS
T06054
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03030
DNA replication
mjv03410
Base excision repair
mjv03420
Nucleotide excision repair
mjv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108385077 (LIG1)
03410 Base excision repair
108385077 (LIG1)
03420 Nucleotide excision repair
108385077 (LIG1)
03430 Mismatch repair
108385077 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mjv03032
]
108385077 (LIG1)
03400 DNA repair and recombination proteins [BR:
mjv03400
]
108385077 (LIG1)
Enzymes [BR:
mjv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108385077 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
108385077 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
108385077 (LIG1)
DNA replication proteins [BR:
mjv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108385077 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108385077 (LIG1)
DNA repair and recombination proteins [BR:
mjv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108385077 (LIG1)
NER (nucleotide excision repair)
Other NER factors
108385077 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
108385077 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
108385077
NCBI-ProteinID:
XP_017497849
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MQRSIMSFFQPKKEGKAKKPERETSNSIRDAESPPKVALKERNGVVPEGDSPVKRPGRKA
ARVLGSEGEEEDEALTSPKGQKPASGSPQASPPSPVAFQKNSPSHSDTSLVGISPAGILK
RRTARKQLPKRTIQDVLEEQSEDKGREAKRKKAEDAETPTENLTEPEVARKQEAEEEDRR
TAPPAHPKTAKPEAAVKQDAGEDQAKAKARPRAPKTLSSFFTPRKPTVKQEVKEEGSGAP
GREASKGPLDPPSYNPAKNNYHPVEDACWEPGQKVPYMAVARTFEKIEEVSARLRMVETL
SNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLEAVRAE
AAEKGDLGLVAENSRSTQRLMLPPPVLSASGVFSKFRDIGRLTGSASTAKKMDIIKGLFV
ACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVVDAGKGKTAEAR
KTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLDRLPEHCRLSPGVPLKPMLAHPTRGVS
EVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPS
VTSFILDSEAVAWDQEKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFDLIYLNGESLVR
EPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAEFLEQSVKDSCEGLMVKTLDVDAT
YEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEESEELQA
ICKLGTGFSDEQLEEHHQSLQALVLPTPRPYVRAEGVVAPDHWLDPSAVWEVKCADLSLS
PIYPAARGLVDDEKGISLRFPRFVRVREDKRLEEATTSAQVACLYRRQSQIQNQQDSDLD
SDLEDFY
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcatgtcttttttccaacccaagaaagagggcaaagcgaagaaacca
gagagggagacatccaacagcatcagagacgcagagtcccctcccaaggtggcactgaaa
gagcggaatggagtggtgcccgagggtgactctcctgtgaagcggccagggaggaaggcg
gcccgggtcctgggcagtgaaggggaggaggaggatgaagccctcacgtcccccaaaggc
cagaagcctgcctcaggctctccgcaagcctcccctcccagtccagttgcatttcagaag
aacagcccttcccactcggacacttccctggtgggcatctccccagcagggatcctgaag
cgccgcacagctcggaagcagcttcctaaacggacaattcaggatgtgctggaagagcag
agcgaggacaagggcagagaagccaagaggaagaaggcggaggacgcagagactccaaca
gagaacctcacagagcctgaagtggccagaaagcaggaagcagaggaggaggaccggcgc
acagcaccccctgcacacccgaagaccgccaagcctgaggcggctgtgaagcaggacgca
ggggaggaccaggcgaaggcaaaggcccggcccagagctcccaagacactcagcagcttc
ttcaccccccggaagccgacagtcaagcaggaggtgaaagaagagggatctggtgctccg
ggaagggaagcgagcaaaggaccccttgacccacccagctacaatcctgccaagaacaac
taccatcccgtcgaagatgcctgctgggagccaggccagaaggtcccttatatggccgtg
gcccggacgtttgagaagatagaggaggtttctgctcggctccgtatggtggagacgctg
agcaacttgctgcgctccgtggtggccctgtcacctccagacctcctccccatcctctac
ctcagcctcaaccgccttgggccgccccagcagggcctggagcttggagtcggtgacggt
gtccttctcaaggcagtggcccaggccacgggtcggcagctggaggccgtcagggccgag
gccgctgagaagggcgacctggggctggtggccgagaacagccgcagcactcagagactc
atgctgccgccacccgtgctctctgcctccggggtcttctccaagttccgggacatcggc
aggctcaccggcagcgcttccaccgccaagaagatggacatcatcaaaggactcttcgtt
gcctgccgccactcggaagcccgattcattgccaggtccctgagtggtcggctgcgcctc
gggctggcagagcagtcagtgctggccgccctcgcccaggccgtgagcctcacgccccca
ggccaagaattccccccagcagtggtggatgctgggaagggcaagacagcagaggccaga
aagacctggctggaggagcaaggcatgatcctgaagcagacattctgcgaggtgcccgac
ctggaccggatcgtccctgtgctgctggagcacggcctggaccggctcccggagcactgc
aggctgagcccaggggtccccctgaaacccatgttggcccaccccacccggggtgtcagt
gaggtcctgaaacgcttcgaggaggcagctttcacctgcgagtacaaatacgatgggcag
agggcacagatccatgttctggaaggcggggaggtgaagatcttcagcagaaatcaggaa
gacaatactggaaagtaccctgacatcatcagccgcatccccaagattaaactcccttcg
gtcacatccttcatcctggactctgaagctgtggcttgggaccaggaaaagaagcagatc
cagccattccaagtgctcaccacccgcaaacgcaaggaggtggatgcagcagagatccag
gtgcaggtatgcctgtacgccttcgacctcatctacctcaatggagagtccctggtacgt
gagcccctgtcccggcgcaggcagctgctccgggagaacttcgtggagacagagggcgag
tttgtctttgccacctccctggacaccaaggacatggaccagatcgcagagttcttggag
cagtcggtgaaagactcctgcgaggggctgatggtgaaaaccctggatgtcgatgccaca
tatgagatcgccaagagatcgcacaactggctcaagctgaagaaggactatctcgacggt
gtgggtgacaccctggacctcgtggtcatcggcgcctacctgggccgggggaagcgggcc
ggccgctacgggggcttcctgctggcctcctacgatgaggagagtgaggagctgcaggcc
atatgcaagcttgggactggcttcagcgacgagcagctggaggagcatcaccagagcctc
caggccctggtgctgcccaccccacgcccctatgtccgggccgaaggtgtggtggcccct
gaccactggctggaccccagtgccgtgtgggaggtgaagtgtgccgacctctccctctcc
ccaatctaccccgctgcccggggcctggtcgacgatgagaagggcatctcccttcgcttc
ccgcggtttgtgcgcgtccgggaagacaagaggctggaggaggccaccaccagtgcccag
gtggcttgtctgtacaggaggcaaagtcagattcagaaccagcaggactcagacttagac
tctgacctggaagatttctactag
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integrated database retrieval system
