Manis javanica (Malayan pangolin): 108385352
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Entry
108385352 CDS
T06054
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108385352 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjv03021
]
108385352 (CPSF3)
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108385352 (CPSF3)
Transcription machinery [BR:
mjv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108385352 (CPSF3)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108385352 (CPSF3)
U7-dependent histone pre-mRNA processing factors
108385352 (CPSF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
108385352
NCBI-ProteinID:
XP_036882438
LinkDB
All DBs
Position
1:complement(235917862..235949772)
Genome browser
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDGSILGVTVDGKTANINLETRAVECEEGSE
DDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgattcctgctgaggagagtgaccagctgctgatccgaccccttggagctggg
caggaagtaggaagatcttgtattattctggagttcaaaggaagaaaaataatgttggac
tgtgggatccaccctggcctagaaggaatggacgctcttccttatattgatttaattgac
ccagctgagattgatctcctactaattagtcatttccatttggatcactgtggagctttg
ccctggtttctacagaagacaagtttcaaaggaagaacattcatgactcatgctaccaaa
gctatttacagatggcttctttcagattatgtcaaagttagtaatatatcagcagacgac
atgctgtatacggagacagatttggaagagagcatggacaagattgaaaccatcaacttt
catgaagttaaggaagttgcaggaatcaagttttggtgttaccacgcaggccacgtcctg
ggagcggccatgttcatgatagagatcgcaggcgtgaagcttttgtacacaggtgatttc
tcaagacaagaagacagacacttaatggcagctgaaattcctaatattaaacctgatatt
cttatcattgagtccacctacgggacccacatccacgagaagcgtgaagagcgagaagca
agattctgtaacactgttcacgacattgtcaacagagggggcagaggtctcattcctgtc
tttgctctcggaagggctcaggagctgctcttgattttagatgagtactggcagaatcac
ccagaactccatgatattccaatatactatgcgtcgtctttggccaagaagtgtatggcg
gtgtaccagacatatgtaaatgccatgaatgacaaaatccgcaaacagatcaacatcaac
aatccctttgttttcaaacacattagtaacctcaagagcatggaccattttgatgacatc
gggcccagtgttgtgatggcctccccgggcatgatgcagagcggcttatccagagagctc
tttgaaagctggtgtactgacaagaggaacggcgtcatcatagcagggtactgtgtagaa
gggacactcgccaagcatatcatgtctgaaccagaagaaatcactaccatgtctggacag
aagttaccactaaaaatgtctgttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgcgctttgaaaccacctcatgtgattttagtccatggagaa
cagaatgaaatggctagactgaaagcagctctgattcgggaatatgaagataatgatgaa
gttcacatagaagttcataatcctcggaacacagaagcagtgaccttgaactttagagga
gaaaagctagccaaggtgatgggctttttagcagacaaaaaaccagaacaaggccagcgg
gtctcaggaatacttgttaaaagaaactttaattatcacatactttctccttgtgacctt
tccaattatactgacttggccatgagcactgtgaaacagacccaagccattccgtatact
gggccttttaatttgctctattaccagctacagaaattgacaggtgatgtagaagaatta
gaaattcaagaaaaacctgctctgaaagtattcaaaaatatcactgtaatacaggagcca
ggaatggtggtattagaatggttagcaaacccttccaatgacatgtatgcagacacagta
acaactgtgatactagaagtccagtcaaacccgaaaataaggaaaggtgcagtacagaag
gtctctaaaaaattagagatgcacgtgtacagcaagaggctggaggtcatgctccaggac
atatttggagaagactgtgtaagtgtaaaagatggttctattcttggtgtcacggtggat
ggaaaaactgcaaatattaacttggagacacgggctgtagaatgtgaagaaggaagtgaa
gatgatgaatccctccgggaaatggtggagctggctgcccagagactgtatgaggccctt
acgccagttcattga
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