Manis javanica (Malayan pangolin): 108386945
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Entry
108386945 CDS
T06054
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X2
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
108386945 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mjv04121
]
108386945 (SLX4)
03400 DNA repair and recombination proteins [BR:
mjv03400
]
108386945 (SLX4)
Ubiquitin system [BR:
mjv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
108386945 (SLX4)
DNA repair and recombination proteins [BR:
mjv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108386945 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
Toxin_12
Motif
Other DBs
NCBI-GeneID:
108386945
NCBI-ProteinID:
XP_017500562
LinkDB
All DBs
Position
Unknown
AA seq
1724 aa
AA seq
DB search
MMDESDDDFKELCASFFQRMKKNSTKEVCGERKTQKASKCTQRKNTLKQTKPAATESKTP
RRPRERKAGSGSQVSRSKKPGAPKRQESAPVPSEHGEGSTAANLRESVRRLQTEAALASS
SQPPPSCVTVSVPSPSKPRTAELVLQRMQQFKRADPERLKHASGGCSPEAALEEKVPKGP
PDEMVAWNGSEPALPSTESDAAVALALQQELGQERASAHGDGLEEKGLFFCQICQKNLSA
MNATRREQHVNRCLDEAEEALRPAAQIPGCPVCGKPFLTLKSRISHLKQCAVKMEVGPQL
LLQAVRLQAAQLEGACSPPVSSFGNHAGGLKRKGAAAKEEPQRKRKARKAEAPSEDLLVA
MALSRSEMEQEAVPAALRLGSAVPGRTLPGAEKKSRKKKAPISPPQLLVQDAETTRRQME
ARVAQLLAEEAELPSTPPLPPSRILKEELEKARQRLPPPEGKQNFLWEGSALTGAWAPES
FYTASLVPPVVPQPPPKGLTQASTLPPVLPDQPELGVHTPPAPLSAHPAGCMSPSASQRE
HQALQDLVDLAGEGLSASPWPCSGNLAGSGRATGMGLSPSGLPPTGFVLPPKEQHLEQDS
QASLSLGLLLADFRAMVNNPHLSDIQFQTDSGEVLHAHTFVLYARCPLLFQYVSREGFSA
VEDGEPRTQRVLLSDVSPETARAFLHYLYTADSGLPPELAPGLSALAHRFGLSELVLLCE
QAPVVMDSEGRGWKEKENEDCESRAENFQELLRSVWRDEEEEVETLLRCEGAEEDREKVN
EAEMEEIYEFAATQRKLLQEERAPEVEGTTSQLGEEGPVSGRILAQVKEQLENAEQTDSS
GQGSGEAPARWEDTSRSTALLLEGQVSGLEERVGPPGEALAPSSRSSAGPARSCQAGRKG
GAFLYPADFSDDGQPLSSAQYPEPSQTMHDPEEENSPVRERGLESAHPPAHQWAPPSNLS
LSRSQPPQGRSPGWPHPRPQHTSGPAPLTPKSQGGAPRVASQNSPLKQKRGRSLLALLQD
PGCQRGKECCSMLACRSRGVLISPERPSSVGPAQLEPGHCSSRPQNSPPSGSKEEIILLL
DSDEEPEPQQAQTMPAFNSPPGERKVLEMSPKSSELFSIIDVDADQEPSQSPPRREAALQ
RELEGPSGKQGPVGGRGTPPLFCDPGSSPSEDSMTDTSWLVPATPLASRSRDCSSQTRIT
GLGSRASEGQTAQLKPRVLLENRDRPEATNKLSVIVPQMLPPCPVPVPPGGPASLTRTVQ
KHSPPGPSLLNPATASEVVEVEDSEDEPEAASRRANSSPQRDSGLPAPADSCCWYTEPLS
PIPIDRLNLEWTGPLSTSSPGGRAGEAPSSADHHSPALLGITPIRESFSGQRKSQEKSSW
ASSPGGSRPSFLNSALWDDWDTEEQKPPEVLPVDQVPKSEGPQTPKGANQKNLPPKVPIT
PMPRYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLGSDSEDEVPLRTPRS
QSHTTKTSEASGTAGHVQLEATSGPVPQRSKGPAKTKGPLHRKQWPGGSTPLLGMSPAEV
VRPGPDGDTELTASQESTASSLDSSDSSFSSQSCSSEFGGAFECAGDGEGEEAAAGAPQA
AVQAAATEEAVWRHIRTTPALYRKVLLYQPFELAELQAELRQHGIRMAMGKLLDFLDAHC
ITFTSAAARKEKLERKRRQPVGRKKRVRTNGPVPASLSPAVSSL
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtcagacgatgattttaaggaactctgcgccagctttttccagaggatg
aaaaaaaatagcaccaaggaagtgtgtggggagaggaaaacacagaaggcctcaaagtgc
actcaaagaaaaaacacactgaaacagaccaaaccagctgctaccgagagcaaaacccct
cgccgccccagggagaggaaggctgggtctggcagccaggtctccaggagcaaaaagcca
ggggcacccaagcggcaggagagcgcaccggtcccctctgagcacggggagggaagcact
gctgccaacctccgggagagcgtgcggcgcctccagacagaggccgctctggccagcagc
agccagccccctccttcctgtgtgactgtgtcagtgccgagtccctccaaaccccggacg
gcagagctggtcctccagcgaatgcagcagttcaagagagcagaccccgagcgtttgaaa
catgcttcaggagggtgctccccggaggcggcccttgaagaaaaggtcccaaagggccct
ccagacgagatggtggcttggaatgggtcagagcctgcactccccagcacagagagcgac
gctgctgtggccttagccctgcagcaggagcttgggcaggaacgagcatccgcgcacggc
gacggcctggaggagaagggcctgttcttctgccagatctgccaaaagaacctctcagcc
atgaacgccacccggagggagcagcatgtgaaccggtgcttggatgaggctgaagaggcg
ctgagacccgcggctcagatccctgggtgcccggtgtgtggcaagccgtttctcacccta
aagagcagaatcagccacctgaaacagtgtgcggtgaagatggaagtcggcccccagctc
ctgctccaggccgtgcggctgcaggcagctcagcttgagggggcctgcagccctccagta
tcaagcttcggcaatcatgcgggcggcctgaagcggaagggagccgcggccaaggaggag
ccacagaggaagcggaaggcccgcaaggccgaggcgccatcagaggacctgctggtggcc
atggccctgtcccggtccgagatggagcaggaggctgtgccggcggcgctcaggctgggg
agcgctgtgcccggaaggactctgccaggagcagaaaagaagagtcgcaagaagaaagcc
cccatctccccgccccagctgttagtccaggacgcagagaccacacggaggcagatggag
gcccgggtggcccagctcctggccgaggaagcagagctgcccagcacgccaccccttccg
cccagcagaattttaaaggaagagctggaaaaggctcgccagcgtctgccaccgcccgaa
gggaagcagaactttctgtgggaaggcagtgccctgactggggcctgggcccccgaatcc
ttctacacggcaagcctggtccctcccgtggtgccccagccgccccccaagggtctcacc
caggcgtccacgctgcctccagtgctgcctgaccagccagagctgggtgtgcacacaccg
ccagctcccctcagtgcccaccctgcgggctgcatgtcaccctctgccagccagagggag
caccaggccctgcaggacctcgtggacctagcaggagaagggctgagcgccagcccatgg
ccctgcagcgggaacctggccggctcaggaagggccacagggatgggcttgtctcccagt
ggccttccaccgactgggtttgtcctgccacccaaggagcagcatctggagcaggacagc
caggcctcgctttcgctcggtttgctgctggccgacttcagagccatggtcaataacccg
cacctcagcgacatccagttccagacggacagcggggaggtgctgcacgcccacaccttc
gtgctttatgcccggtgcccccttctattccagtatgtgagcagggaaggtttctctgct
gtagaagacggcgagcccaggacccagcgtgtcctgctgagtgacgtgagccccgagact
gcccgcgccttcctgcattacctctacacggcggactccggcctgccccccgagctggct
cctggcctgagtgccctggcccacagatttgggctgagcgagctcgttctcctgtgtgaa
caagcacctgtcgtgatggattcagagggcagaggatggaaggagaaggaaaacgaggat
tgtgaaagcagagcagagaatttccaagaactcttgaggtcggtgtggagagatgaagag
gaagaagtagagactttgttgaggtgtgagggtgctgaggaagacagagaaaaagtgaat
gaagcagaaatggaagaaatttatgaatttgctgctactcagcgaaagctgctgcaggag
gaaagagctccagaggttgaggggacaaccagccaacttggggaggagggtccagtttct
gggcgaatcctggcccaggttaaagaacagctggaaaacgcagaacagacggactcgtcg
ggacagggcagcggtgaggccccagccaggtgggaggacacgagccggtccacagccctg
ctcctggagggccaggtttcgggcttggaggagagagtggggccccccggggaagcactg
gctccctcgagccgctctagcgctggtcctgctcgcagctgccaggcagggagaaaggga
ggtgccttcttgtatccggctgacttcagtgacgatggacagcctttatcatcagctcag
taccctgaaccgtcccaaaccatgcacgatcccgaggaagaaaacagccctgtcagggag
agggggctggagagtgctcatccgcctgcccaccagtgggcgcccccctcaaacctaagc
ctctcccggtctcagccccctcaaggcaggagtccgggctggccacaccctcgccctcag
cacacaagtggcccggccccactgacacccaaatcacagggcggagcacccagggtggcc
tcccagaactcaccactgaagcagaagaggggcaggagccttctcgccttacttcaagat
ccaggctgccagagaggcaaagaatgctgctccatgttggcatgcagaagcagaggggtc
ctgatctccccagaaaggccttcatccgttggcccagcccagttagaacccggccactgc
agctccagacctcagaattctccacccagtgggagcaaagaggagattatcctcttactg
gattcagatgaagagccagagccacaacaagcccagacaatgcctgcttttaatagtccc
ccaggagaaaggaaagttctagaaatgagccccaagtcctctgagctgttttccatcatc
gatgttgatgcagaccaggaaccttcccaaagcccaccaagaagagaggccgcactgcag
cgggagttggaggggccatcagggaagcagggccctgtgggtggcagagggacccccccg
ctgttctgtgaccctgggagcagccctagtgaggacagcatgacagacacctcatggctg
gtgcccgccacccccctagctagcaggagccgtgactgttcatcgcagacccgaatcacg
ggcctggggtccagggcttcagagggtcaaacggctcagctcaaacccagggtcctgtta
gaaaacagggacaggcccgaagccacgaataagctgtcagtgattgtgccccagatgctg
ccgccatgcccggtgcctgtccctccagggggccctgccagtctcaccaggaccgtccag
aagcactcaccccctgggccaagcctgctgaatccagccacagcaagtgaagtggtagag
gtggaggacagcgaagatgagccggaggcagcctctcgtcgggcgaacagcagcccacag
cgggacagtggcctcccagccccagctgacagctgctgctggtacacagagcccctctca
ccgatccccattgaccgcttgaacctggagtggaccggccctctgagcaccagcagccct
ggcggtagggcaggggaggccccaagcagtgctgaccaccactccccggcactcctgggc
atcacccccatccgagaaagcttctctggacaaagaaagtctcaagagaaatcctcttgg
gccagctcccctggaggcagcaggccaagctttctgaattcagcgctgtgggatgactgg
gacacagaagaacagaagcctccagaggttcttcctgtagaccaagttccaaaatcagaa
gggccacagacaccaaaaggtgctaaccagaagaacttgcccccgaaagtgcctataacc
ccaatgccaagatactccatcatggagaccccggtactgaagaaagaactggacaggttt
ggggtccgccctctgcccaaacggcagatggtcctgaaactgaaggagatattccagtac
actcaccagacgctggggtcagactccgaggatgaggtgcccctgaggactcctcgcagc
cagagccacaccaccaagacctctgaggcttcagggacagctggccatgtccagctggag
gccacttctggtcctgttccccagagatccaagggacctgctaagaccaagggcccccta
catcgaaagcagtggcctggtggaagcacacccctgctgggcatgtcaccagccgaggtg
gtacgtccaggccctgatggtgacaccgagctcacggcctcccaggagtccacagcctcc
tctctggacagcagtgacagctcctttagctcacaaagttgttccagtgagtttggagga
gcctttgagtgtgcaggagacggggaaggcgaggaggcagcggccggtgcgccacaggca
gccgtccaggcagcagccaccgaggaggctgtgtggcgtcacatccgcaccacgccggcg
ctctaccgcaaggtcctgctgtaccagccctttgagctggcggagctgcaggctgagctg
aggcagcatggcatccgcatggccatggggaagctgctggacttcctggacgcccactgc
atcaccttcaccagcgccgcggcccggaaggagaagctggagagaaagaggcggcagccc
gtgggtaggaagaagagggtccgcaccaatgggcccgtccctgcctccctctcccctgcc
gtcagcagcctgtga
DBGET
integrated database retrieval system
