Manis javanica (Malayan pangolin): 108390098
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Entry
108390098 CDS
T06054
Symbol
SCN1A
Name
(RefSeq) sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
108390098 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mjv04040
]
108390098 (SCN1A)
Ion channels [BR:
mjv04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108390098 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
ATP-synt_B
GPHH
IQ
New_glue
FUT8_N_cat
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
108390098
NCBI-ProteinID:
XP_036859426
LinkDB
All DBs
Position
Unknown
AA seq
1969 aa
AA seq
DB search
MEPTVLVPPGPDSFRFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPGMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMKSPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSLEKNITVNY
NGTLVNETLIEFDWKSYIQDSRYHYSLEGSLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVTASEHSGDPSGTRGLSD
TSSETSKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSVRRKGFRFSIEGN
RLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDN
ESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAMFPTNGKMHSTVDCNGVVSLVGGPSVPT
SPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASILT
NTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVLN
TLFMAMEHYPMTAQFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVT
LSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIV
FIFAVVGMQLFGKSYRDCVCKISRDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCME
VAGQTMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHK
GIAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNKKNSCMSNHTAEIGKDLDYLRDVNG
TTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEES
KEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQIGVEEGRG
KQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALCVFIYFLVQVSLVSLTANALGYSELG
AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFA
GKFYHCVNTTTDDIFDISEVNNHSDCLELIERNETARWKNVKVNFDNVGFGYLSLLQVAT
FKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQK
KKISISNIFSPKNSKIISSVSPPNKHFNSEKKGYKNPFLHPPPLTSINKFQGMVFDFVTR
QVFDISIMILICLNMVTMMVETDDQSEYVTSVLSRINLVFIVLFTGECVLKLISLRYYYF
TVGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLL
FALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQI
TTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNM
YIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLN
LPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRVQMEDRFMASNPSK
VSYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYNKNKIKGGANLLVKEDMI
IDRVNENSITEKTDLTMSTAACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
5910 nt
NT seq
+upstream
nt +downstream
nt
atggagccaacagtgcttgtacccccaggacctgacagcttccgcttcttcaccagagaa
tctcttgcagctattgaaagacgcattgcagaagaaaaggctaagaaccccaagccagac
aagaaggatgatgatgaaaatggcccaaagccaaatagtgacttggaagcggggaagaac
ctcccgtttatttacggagacatccctccggggatggtgtcagagccgctggaggacctg
gacccgtactacatcaataaaaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaacgcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattctgacc
aactgtgtgttcatgaccatgaagagccctcccgactggacaaagaatgtagagtacaca
ttcacaggaatatatacttttgaatcacttataaaaatcattgcaaggggcttctgctta
gaagattttactttccttcgggacccatggaactggcttgactttaccgtcattacattt
gcgtacgtgacagagtttgtggacctgggcaacgtctcagcgttgagaacattcagagtt
ctccgagcactgaaaacaatttcagtcattccaggcctgaagaccatcgtgggggccctg
atccagtctgtgaagaagctctcagacgtcatgatcctgaccgtgttctgtctgagcgtg
tttgccctgattggactgcagctcttcatgggcaacctgcggaataagtgtgtccagtgg
cctcccaccaatgcttccctggaagaacacagcctagagaagaatataactgtgaattac
aacggcacgcttgtaaacgaaactctcattgagtttgactggaaatcctatattcaagat
tcaagatatcattatagtctggaaggtagtttagatgcactgctatgcggaaatagctct
gatgcaggtcaatgtccagaaggatatatgtgtgtgaaagctggtagaaatcccaattat
ggttacacaagctttgataccttcagctgggcttttttgtccctgtttcgactgatgact
caggacttctgggaaaatctttaccaactgacactccgtgctgctggaaaaacatacatg
atattttttgtgctggtcattttcctgggctcattctatctgataaatttgatcctggca
gtggtggccatggcctatgaggagcagaatcaggccaccttggaagaggcagaacagaaa
gaggctgaatttcagcaaatgctagaacagcttaaaaaacaacaggaagcagctcaggcg
gccgcggtgacagcctccgagcattccggggacccgagcgggacgcgcgggctttccgac
acctcctccgaaacgtccaagttgagttcgaagagcgctaaggaaagaagaaatcggaga
aagaaaagaaaacagaaagaacagtcaggtggggaagagaaagacgaggatgaattccac
aagtcggaatctgaagacagcgtcaggaggaaggggtttcgcttctccatcgaggggaat
cggctgacctatgagaagcggtactcctcccctcaccagtcattgttgagcatccgtggc
tccctattttctccaaggcgaaatagcagaacaagccttttcagctttagagggcgagca
aaggatgtgggatccgagaatgattttgctgatgacgagcacagtacctttgaggataat
gagagccggagagactcgctgtttgtgccccgacggcacggagagcgacgcaacagtaac
ttgagtcagaccagcaggtcgtcccggatgctggccatgtttccgacaaatggcaagatg
cacagcactgtggattgcaatggtgtggtttccttggtgggtggaccctcggttcctaca
tcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgacaat
ggaacaaccactgaaactgaaatgagaaaaagaagatcaagttctttccatgtgtccatg
gactttctagaagatccttcccaaaggcaaagagcaatgagtatagccagcattttaaca
aatacagtagaagaacttgaagaatccaggcagaaatgcccaccctgttggtataaattt
tccaacatattcttaatctgggactgctcgccgtattggttgaaggtgaagcacatcgtc
aacctggtcgtgatggacccgtttgtcgacctggccatcaccatctgcattgtcttaaat
acgctcttcatggccatggagcactacccgatgacggcgcagttcaataatgtgcttaca
gtaggaaacttggtcttcaccgggatctttacagcagaaatgtttctgaaaattattgca
atggatccttactattatttccaagaaggctggaatatctttgatggctttattgtgacg
ctcagcctggtagagcttggcctcgccaatgtggaaggattatcagttctccgttcattc
cgactgctccgagttttcaagttggcaaagtcctggcccaccctgaacatgctgataaag
atcatcggcaactcggtgggggccctgggcaacctcaccttggtgctggccatcatcgtc
ttcatcttcgccgtggtcggcatgcagctcttcgggaagagctacagagattgcgtctgc
aagatctccagggactgcgagctcccgcgctggcacatgcacgacttcttccactcgttc
ctgatcgtgttccgcgtgctgtgcggggagtggatagagaccatgtgggactgcatggag
gtcgcgggccagaccatgtgcctcactgtcttcatgatggtcatggtcattggaaacctg
gtggtcctgaacctctttctggccttgcttctgagctcatttagtgcagacaaccttgca
gccactgatgatgataatgagatgaacaatctgcaaattgctgtggacaggatgcacaag
ggaatagcttatgtgaagagaaaaatatatgaatttattcaacaatcctttgttagaaaa
caaaagattttagatgaaattaaaccacttgatgatctaaataataagaaaaacagttgt
atgtccaaccatacagcagaaatcgggaaagatcttgactatctcagagacgtaaacgga
actacaagtgggataggaaccggcagcagcgttgagaaatacattattgatgaaagtgat
tacatgtccttcataaacaatcccagcctcactgtgactgtaccgattgctgtaggagag
tctgactttgaaaatttaaacaccgaagacttcagcagtgaatcagatctggaagagagc
aaagagaaacttaacgagagcagtagctcttctgagggcagcactgtagacattggggca
cctgccgaggaacagcctgtagtggaacccgaggagacccttgaacccgaagcctgtttc
actgaaggctgtgtacaaagattcaaatgttgtcagatcggtgtggaagaagggagagga
aaacaatggtggaacctgagaagaacatgtttccgaatagttgaacataactggtttgag
accttcattgtgttcatgattctccttagtagtggtgctctgtgtgtatttatttatttt
ttggtgcaggtctcattagtcagtttaacagcaaatgccttgggttactcagaacttggt
gccatcaaatccctcaggacactaagagctctgaggcctctaagagccttgtcaagattt
gaagggatgagggtggttgtgaatgcccttttaggagcaattccctccatcatgaatgtg
cttctggtttgtcttatattctggctaattttcagcatcatgggcgtaaatttgtttgct
ggcaaattctaccactgtgttaacaccacaactgatgacatatttgacatcagcgaagtg
aataatcattctgattgcctagaactaatagaaagaaatgagactgcccgatggaaaaat
gtgaaagtaaactttgataatgtaggatttgggtatctctctttgcttcaagttgccaca
tttaagggatggatggatataatgtatgcagcagttgattccagaaatgtggaactccag
cctaagtatgaggaaagtctatacatgtatctttactttgttattttcatcatctttggg
tccttcttcaccttgaacctgttcattggtgtcatcatagataatttcaaccagcaaaaa
aagaagataagtatttctaacattttctctcccaaaaatagtaaaattatttcaagtgtt
tctccaccgaataaacactttaattcagaaaaaaaagggtataaaaatccatttttgcat
cctccccctctgacatccattaacaagttccaaggcatggtctttgacttcgtgaccagg
caggtcttcgacattagcatcatgatcctcatctgcctgaacatggtcaccatgatggtg
gagaccgacgaccagagcgagtacgtgacgagcgttttatcgcgcatcaatctggtgttc
atcgtgctgttcaccggcgagtgcgtgctgaagctcatctccctccgctattattatttt
acagtaggctggaatattttcgattttgtggttgtcattctctccattgtaggcatgttt
ctggccgagctgatagagaagtatttcgtgtcccctaccctgttccgagtgatccgtctc
gccaggattggccggatcctgcgtctgatcaaaggggcgaaggggatccgcacgctgctc
ttcgccctgatgatgtccctccccgcgctgttcaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttggaatgtccaacttcgcctacgttaagagggaagctgga
atcgatgacatgttcaacttcgagacctttggcaacagcatgatctgcctgttccagatc
accacctcggccggctgggacgggctgctagcccctattctcaacagcgcgccacccgac
tgcgaccctgacacaattcaccctggaagctcagttaagggggactgtgggaacccatct
gtggggattttcttcttcgtcagctacatcatcatatcctttctggttgtggtgaacatg
tacatcgccgtcatcctggagaacttcagcgttgctaccgaagaaagtgcagagcccctg
agcgaggatgactttgagatgttctacgaggtctgggagaagttcgaccccgacgccacc
cagttcatggaatttgaaaaactatcccagtttgcagctgctcttgaaccgcccctcaac
ttgccacaaccaaacaaactccagctcatcgccatggacctgcccatggtcagtggagac
cggatccactgcctggacatcttatttgcttttaccaagcgggttctgggggagagtgga
gagatggatgctctccgagtacagatggaagacaggttcatggcttccaatccatcaaag
gtctcctatcaaccaataactacaactttaaaacgaaaacaagaagaggtgtctgccgtt
attattcagcgtgcttacaggcgccaccttttaaagcgaactgtaaaacaagcttcattt
acatataataaaaataaaatcaaaggtggggctaatcttcttgtaaaagaagacatgata
attgacagagtaaatgaaaactctattacagaaaaaactgatctgaccatgtccacagca
gcttgtccgccctcctacgatcgggtaacaaaaccgatcgtggaaaaacatgagcaagaa
ggcaaggatgaaaaagccaaagggaaataa
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integrated database retrieval system
