Manis javanica (Malayan pangolin): 108390868
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Entry
108390868 CDS
T06054
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03015
mRNA surveillance pathway
mjv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108390868 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
108390868 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108390868 (PABPC1)
03041 Spliceosome [BR:
mjv03041
]
108390868 (PABPC1)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108390868 (PABPC1)
mRNA cycle factors
Stress granule specific factors
108390868 (PABPC1)
Spliceosome [BR:
mjv03041
]
Complex C
Other components
Complex C specific factors
108390868 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
108390868
NCBI-ProteinID:
XP_073086002
LinkDB
All DBs
Position
2:complement(185306247..185322922)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggcggggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccctgggctacgcatatgtgaacttccag
cagccagcggacgcggagcgtgctttggacaccatgaattttgatgttataaaaggcaag
ccagtacgtatcatgtggtctcagcgtgatccatctcttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgacaataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat
ggatttgtgcattttgagacccaggaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaagaacgagaa
gcagaactgggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggttttggatttgtaagctttgaaagg
catgaagatgcacaaaaagctgtggatgagatgaatggaaaggagctcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggaacgacagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
ctcgatgatggtattgatgatgaacgtcttcggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaatggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgtcaggctcacctcacaaac
cagtatatgcagagaatggcgagtgtcagagctgtgcccaaccctgtaatcaacccctac
cagccagctcctccttcaggttacttcatggcagctatcccacagactcagaatcgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtaccatgagaccagcttcttcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacatcaacacagaccatgggtccacgtcctgccgctgccgctgccgca
gccactcccgccgtccgcaccgttccacagtacaagtatgctgcgggagtgcgcaatcct
cagcagcatcttaatgcacagccccaagttaccatgcagcagcctgctgttcatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaa
atgttgggtgaacggctcttccctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattctgaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttga
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