Manis javanica (Malayan pangolin): 108392530
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Entry
108392530 CDS
T06054
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv04820
Cytoskeleton in muscle cells
mjv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108392530 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
108392530 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mjv00536
]
108392530 (COL11A1)
Glycosaminoglycan binding proteins [BR:
mjv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108392530 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
108392530
NCBI-ProteinID:
XP_036852349
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MELWSSRWKTKRWLWDFTVTTLALTFLFQAREVRGAAPVDVLKALDFHSSPEGISKTTGF
CTNRKNSKGSDTAYRVSKQAQLSAPTKQLFPGGIFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSETAIVDTNGITVFGTRILDEEVFEGDIQQLLITGDPKAAYDYCEHYS
PDCDSAAPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAESVTDRPTVTEETVAQTEA
NIVEDFQEYSYGTVESYQTEAPRRASGPNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTLY
ENKGIDGRDSDLLVDGDLGEYDFYDYKEYEDKPTSPTNEEFGPGVPAETDITETSINGHG
AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTVSAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKAGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGEDGIRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKS
GLGGLAGADGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGQKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GAKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPLGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPSGSIGSVGGVGEKGEPGEA
GNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGASGAEGRQGEKGSK
GEAGAEGPSGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSSGAKGDGGIPGPAGPIGPP
GPPGLPGPQGSKGTKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTDN
MQADAGDNILDYSDGMEEIFGSLHSLKQDIEHMKFPMGTQNNPARTCKDLQLSHPDFPDG
EYWVDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSAAWYDMSSGSYNKALRFLGSNDE
EMSYDNSPYIKALYDGCASRKGYEKTVIEISTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PACFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagctgtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccgtaaca
accctcgcattgactttcctcttccaggctagagaggtcagaggagctgctcctgttgat
gtactcaaagctctagattttcacagttctccagagggaatatcaaaaacaacaggcttt
tgcacaaacagaaagaattcaaaaggttcagatactgcttacagagtttcgaagcaagca
caactcagtgccccaacaaaacagttatttccaggaggaatttttccagaagatttttca
atattatttacagtaaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcatggtattcagcaaattggtgttgaggttgggagatcacctgttttcctatttgaa
gaccacactggaaaacctgccccagaagactatcccctcttcagaactgttaatattgct
gatgggaagtggcatcgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt
gattgtaaaaagaaaaccaccaaaccacttgatagaagtgagacggcaatcgtagacacc
aatggaatcacagtttttggaacaaggattttggatgaagaagtttttgagggggacatc
cagcagttgttgatcacaggtgaccccaaagcagcatatgactactgtgaacattacagc
cccgactgtgattctgcagcacccaaagccgctcaggctcaggaacctcagattgatgag
tatgcgcctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag
gctgaaagtgtaacagacagacccactgtaactgaggagacagtagcacaaactgaggca
aatattgttgaagattttcaagaatacagctatggaacagtggaaagttaccagacagaa
gctcctaggcgtgcatctggaccaaatgagccaaatccagttgaagaagtatttactgaa
gaatatctaactggagaggattatgattcccagaggaaaaattccgaggatacactatat
gaaaacaaaggaatagacggcagggactctgatcttctagtagatggtgatttaggcgaa
tatgatttttatgactataaagaatatgaagataaaccaacaagccccactaatgaagaa
tttggtccaggtgttccagcagaaacagatatcacagaaacaagcataaatggccatggg
gcatatggagaaaaaggacagaaaggagaaccagctgtagttgaacctggtatgcttgtt
gaagggccaccagggccagcaggacctgcgggtcttatgggtcctccgggtctacaaggc
cccactggaccccctggtgaccctggagagaggggtcctccagggcgtcctggattacca
ggtgctgatggtctacctggtcctcctggtaccatgttaatgttaccgtttcgttatggt
ggcgatggttccaaaggaccaaccgtctctgctcaggaggctcaggcccaggcaattctt
cagcaggctcggattgctctgagaggcccacctggcccaatgggtctaactggaagaccg
ggtcctgtgggggggcctggttcatctggagccaaaggtgagagtggtgatccaggtcct
cagggccctcgtggtgtccaaggtcctcctggcccaacaggaaaagctggaaaaaggggt
cgcccaggtgctgatggaggaagaggaatgccaggagaacccggggcaaagggggatcga
ggatttgatggacttccgggtctgccaggtgacaaaggtcacaggggtgaacgaggtccc
caaggtcctcctggtcctcctggagaagatggaattaggggagaagatggagaaatagga
ccaaggggtcttccaggtgaagctggcccacgaggtttgctgggaccaaggggaactcca
ggacctacaggacagcctggtattgcaggtgtagatggcccaccaggaccaaaagggaac
atgggtccccaaggagagcctggacctccaggtcagcaagggaatccaggacctcaaggt
cttcctggtccacaaggtccaattggtcctcctggtgaaaaaggaccacaaggaaaatca
gggcttgggggacttgctggtgctgatgggcctcctggtcatcctggaaaagaaggccag
tctggagataagggcgccctgggtcctcctggtccacagggtcctattggctaccctggt
ccccgaggagtaaagggagcagatggtgtcaggggtctcaagggctccaaaggtgaaaag
ggtgaagatggttttccaggcttcaaaggtgatatgggtctaaaaggtgacagaggagaa
gttggtcaaataggtccaagaggagaagatggccctgaaggccccaaaggtcgggcaggt
cctactggagaccccggtccttctggtcaagcaggggagaaggggaaacttggtgtccca
ggattgccaggatatccaggaagacaaggtcaaaagggttccactggatttcctgggttt
ccaggtgccaatggagagaaaggtgcacggggtgtagccgggaaaccaggccctaggggt
cagcgtggtccaacgggacctcgaggttcaagaggtgcaagaggtcccactgggaaacct
ggtgcaaagggcacttcaggtggtgatggccctcctggtcctcccggtgaaagaggccct
caaggacctcagggtccagttggattccctggaccaaaaggccctcctggaccaccaggg
aaggatggtctgccaggacaccctgggcaacgtggagagactggatttcaaggcaagact
ggtcctccagggccagggggtgtcgttggaccacagggaccaactggtgagactggtcca
ataggcgaacgtggacatcctggtcctcctggtcctcctggtgagcaaggtcttcctggt
gctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtatctcagggaaagat
ggaccagcaggactacgtggtttcccaggtgaaagaggtcttcctggagctcagggtgca
cctggactgaaaggaggggaaggtccccagggcccaccaggtccagtgggctcaccagga
gaacgtggatcagcaggcacagctggcccgattggtttgccagggcgtccaggacctcag
ggtcctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaaggccct
gcagggcgagatggagtacaaggccctgtgggcctcccgggaccggctgggcctgctggc
tcccctggggaagatggagacaagggtgaaattggtgaaccagggcaaaaaggcagcaag
ggtgacaaaggagaaaacggtcctcctggtcccccaggtcttcaaggtccacttggtgcc
cctggaattgctggaggtgatggtgaaccaggtcccagaggtcagcaggggatgtttgga
caaaaaggtgatgaaggtgcaagaggtttcccaggacctcccggtcccataggtcttcag
ggtctgccaggcccacctggtgaaaaaggtgaaaatggggatgttggtcccatgggtcca
cctggtcctccaggccctagaggccctcaaggtcccaatggagctgatggaccacaagga
ccctctggatccattggttcagttggtggtgttggagaaaagggtgaacctggagaagcc
gggaatccggggcctcctggagaagccggcacaggcggtcctaaaggagaaagaggagag
aaaggagaagctggtccgcctggtgctgctggacctcctggtgctaagggaccacccggt
gatgacggccctaagggcaacccgggtcctgttggttttcctggagatcctggtccccct
ggggaacctggccctgcaggtcaagatggtgttggtggtgataagggtgaagatggagat
cctggccaaccgggtcctcctggcccatctggtgaggctggccccccaggtcctcctgga
aaaagaggtcctcctggagcttcaggtgcagagggaagacaaggagaaaaaggatctaag
ggagaagcaggtgctgaaggtccttctgggaaaactggcccagttggtcctcagggacct
gccggaaagcccggtccagagggtctacggggaatcccaggccctgtgggagaacaaggc
ctccctggagctgcgggccaggatgggccacctggtcctttgggacctcctggattacct
ggtctcaaaggtgaccctggttccaagggtgaaaagggacatcctggtttaattggcctg
attggtccacctggagaacagggtgaaaaaggtgacagaggactccctgggactcaggga
tcttcaggagcaaaaggggatggaggaattccaggtcctgctggtcccataggtccacct
ggtcctccaggcttaccaggtcctcaaggttcaaagggtaccaaaggctctaccggacct
gctggccagaagggtgacagtgggcttccagggcctcccgggcctccgggtccgcctggg
gaagtcattcaacctttaccaatcttgtcacccaaaaaaacaagaagacatactgacaac
atgcaagcagatgcaggtgataacattcttgattactcggatggaatggaggagatattt
ggttccctccattccctgaaacaagacattgagcacatgaaatttccaatgggtactcag
aacaacccagcccgaacttgcaaagatctgcaactcagccatcctgacttcccagatggt
gaatattgggttgatcctaaccaaggttgctcaggagattccttcaaagtttattgtaat
ttcacgtctggtggtgagacttgcatttatccagacaaaaaatctgagggagtgagaatt
tcatcatggccaaaggagaaaccaggaagctggtttagtgaatttaagagaggaaagctg
ctgtcctatttagatgttgaaggcaattccattaatatggtgcaaatgacattcctcaaa
ctgctgactgcctctgctcggcaaaatttcacctacaactgtcatcagtcagcagcctgg
tatgatatgtcatcaggaagttataacaaagcactccgcttcctgggatcaaatgacgag
gagatgtcctatgacaacagcccttacatcaaagccctgtacgatggctgtgcgtccaga
aaaggctatgaaaagactgtgattgaaatcagtacaccgaaaattgaccaagtacctatt
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgcttgtttccttggctga
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integrated database retrieval system
