Manis javanica (Malayan pangolin): 108394251
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Entry
108394251 CDS
T06054
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108394251 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108394251 (SMG7)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108394251 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
108394251 (SMG7)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
108394251
NCBI-ProteinID:
XP_017511163
LinkDB
All DBs
Position
11:91346225..91425326
Genome browser
AA seq
1215 aa
AA seq
DB search
MRNWMFLQIVIVGENVSFKSQMRTGNLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWT
SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANL
SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC
QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR
SIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP
LREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYNQDEQLCWTQL
LALFMSFLGILCKCPLQNKSQEETYSTYPLPAVKVSMDWLRLRPRIFQEAVVDERQYIWP
WLISLLNSFHPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
RQIRQQRLISVGKWIADNQPRLIQCENEVGKLLFNTEIPELILEDPSEAKENLILQETSM
IESLAADGNPGLKSVLSTGRNLSNNCDTGEKPVVTFKENIKPREVNRDQGRSFPPKEVRR
DYSKGITVTKNDGKKDNNKRKTETKKCTLEKLQETGKQNVAVQVKSQTELRKTPVSEARK
TPVTQTPSQASSSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSV
PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQPQPPSQQPLTSLPAQP
TAQTTSQLQVQALAQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGK
IMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWD
SSYSMADNRAVMAQQANPDRRGKRPPGVFRPEQDPVPRMPFEDPKGSPLLPPDLLKSLAA
LEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQE
RYPNNSVFNEVYGKNLTTSSTAELNPPVAPQETSLYSLFEGTPWSPSLPASSDHSTPASQ
SPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDSRDRRTADRWKTDKPAMGGFGIDYLS
ATSASESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQ
KQKQQRGQGTMNPPH
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattggatgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcc
cagatgaggaccggaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcag
gcagaagtcctgaaagctgacatgacagattctaagctgggtccagctgaggtctggaca
tccaggcaggctctgcaggacctgtaccagaaaatgctagttactgatttggaatatgct
ttagacaagaaagtagaacaggatctctggaatcatgcctttaagaatcagatcacaaca
ctacaaggccaggcaaagaatcgagcaaacccgaatcgaagtgaagttcaggcaaacctt
tctctgttcctagaggcagctagtggcttctatactcagttattacaagaactgtgtaca
gtgtttaatgtagatttaccatgccgtgtgaagtcttcccagttgggaattatcagcaat
aaacagacgcataccagcgccatagtgaagccacagtctagctcctgttcctatatctgc
cagcactgcctcgtccaccttggagacattgctcgctacagaaaccagaccagccaggca
gagtcctactataggcatgcagctcagcttgtcccctctaatggccagccttataatcag
ttggctatcttagcctcttccaaaggagaccatctgaccacaattttctactactgcaga
agcattgctgtgaagttccctttcccagctgcctccactaatctacaaaaggcactttct
aaagcactggaaagccgggatgaggtgaaaaccaaatggggtgtttctgacttcatcaag
gcctttattaaattccacggtcatgtgtacctgagtaagagcttggaaaagttgagccct
cttcgagagaaattggaagaacagtttaagaggctgttattccaaaaagctttcaactct
cagcagttagttcacgtcactgtcattaacctgtttcaacttcatcaccttcgtgacttt
agcaatgaaacggagcagcatagttataaccaagatgaacagttgtgttggacacagtta
ctggccctctttatgtcttttcttggcatcctgtgcaagtgtcctctccagaacaagtct
caggaggagacctacagcacctatccccttcctgcagtcaaggtctccatggactggctg
agactcagacccaggatctttcaggaggcagtggtagatgaaagacagtatatttggccc
tggctaatttctcttctaaatagtttccatccccatgaagaggatctttcaagcactaat
gctacaccacttccagaggagtttgagttacaaggattcttggctttgagaccttctttc
aggaacttggatttttccaaaggccaccagggtattactggagacaaagagggtcagcaa
cgacaaatacggcagcagcgcttgatctctgtaggcaagtggatcgctgataatcaacca
aggctgattcagtgtgaaaatgaggtagggaaattattgtttaatacagaaatcccagag
ttaatactggaagaccccagtgaagccaaagagaacctcattctgcaagaaacatccatg
atagagtcactggctgcagacgggaacccaggactgaaatcagtgctgtctacaggccgc
aatctaagcaacaactgtgacacaggagagaaaccagtggtcaccttcaaagagaacatt
aagccacgagaagtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagg
gactatagcaaaggaataactgtaactaagaatgatggaaagaaggacaacaacaagagg
aaaacagaaaccaagaaatgcaccttagaaaagttacaggaaacaggaaagcagaatgtg
gcagtgcaggtaaaatctcagacagaactaagaaagactccagtgtctgaagccagaaaa
acacctgtcactcaaaccccaagtcaagcaagtagctcccagttcatccccattcatcac
cctggagctttccctcctcttcccagccggccagggttcccgcccccaacatatgttatc
ccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtttctgtc
ccaggaacctttcttcagcctacagctcactctccagcaggaaaccaggtgcaagctggg
aaacagtcccacattccttatagccagcaacggccctctggaccagggccaatgaaccag
ggacctcaacaaccacagccaccttcccagcaacccctcacatctttaccagctcagcca
acagcacagacaacaagccagttgcaggttcaagctctagctcagcaacagtcccctacg
aaagctgtgccggctttggggaaaagccctcctcaccactctggattccagcagtatcaa
caggcagatgcctccaaacaactgtggaatccccctcaggttcaaggcccattagggaaa
atcatgcctgtgaaacagccctactaccttcagacccaagaccccataaaactgtttgag
ccgtcattgcaaccccctgtaatgcagcagcagccgctagagaaaaaaatgaagcctttt
cccatggagccatataaccataatccctcagaagtcaaggtcccagaattctactgggat
tcttcctacagcatggccgataacagagccgtaatggcacagcaggcaaatccggaccgc
aggggcaaacggccacccggagtcttccgtccagagcaggatcctgtgcccagaatgcca
tttgaggaccccaaaggctcccctctgcttcctccggacctgttaaagagtctggctgcc
ttggaggaagaggaagagctgattttttctaaccctcctgatctttacccagctctactg
gggcctctcgcctctcttcctggacgaagcctctttaaatccttgttggagaagccctca
gagctcatgtcacattcatcttctttcctgtccctcaccggcttctctcttaatcaggaa
agatacccaaataacagtgtgttcaatgaggtatatgggaaaaacctaacaaccagctcc
acggcagaactgaatccccccgtggctccccaggagacgtcactgtactccctttttgaa
gggactccgtggtctccatcacttcctgccagttcagatcattcaacaccagccagccag
tctcctcattcctctaacccaagcagcctgccaagctcccctccaacacacaaccataat
tctgttccattctccaattttggacccattgggactccagatagcagggataggagaact
gcagatcgatggaaaactgataagccagccatgggtgggtttggcattgattatctctcg
gcaacatcagcctctgagagcagttggcatcaggccagcactccaagtggcacctggaca
ggccacggcccctccatggaggattcctctgctgttctcatggagagcctaaagtctatc
tggtccagttccatgatgcatcctggaccttccgctctggagcagctgttaatgcagcag
aagcagaaacagcagcggggacaaggcaccatgaatcctccacactga
DBGET
integrated database retrieval system
