KEGG   Manis javanica (Malayan pangolin): 108395247
Entry
108395247         CDS       T06054                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
mjv  Manis javanica (Malayan pangolin)
Pathway
mjv03013  Nucleocytoplasmic transport
mjv03015  mRNA surveillance pathway
mjv03040  Spliceosome
mjv05014  Amyotrophic lateral sclerosis
mjv05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:mjv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108395247 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    108395247 (ALYREF)
   03015 mRNA surveillance pathway
    108395247 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    108395247 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    108395247 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mjv03019]
    108395247 (ALYREF)
   03041 Spliceosome [BR:mjv03041]
    108395247 (ALYREF)
Messenger RNA biogenesis [BR:mjv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108395247 (ALYREF)
    TREX complex
     108395247 (ALYREF)
Spliceosome [BR:mjv03041]
 Complex C
  Other components
   EJC/TREX
    108395247 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108395247 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 108395247
NCBI-ProteinID: XP_036853106
LinkDB
Position
Unknown
AA seq 257 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRVGSQGGRGGGAQAAARVNRGGGPIRNRPS
IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGTRGGSRGRGRGASRSSKQQLSA
EELDAQLDAYNARMDTS
NT seq 774 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggacatgtccctggacgacatcattaagctgaaccggagccagcga
ggcggtcgcggcgggggccggggccgcggccgggtcggctctcagggcggccgcggcggc
ggggcgcaggccgccgcaagagtgaatcgaggcggcggcccgatccggaaccggccgtcc
atcgcccgcggcgcggcgggcggaggcggcaggaaccggcctgcgccctacagcaggccg
aagcagcttcctgacaagtggcagcatgaccttttcgacagcggctttgggggcggcgcc
ggcgtggagacgggtgggaaactgctcgtgtcgaatctggatttcggagtgtccgacgct
gatattcaggaactctttgctgaatttgggaccctgaagaaggcagctgtgcattacgat
cgctctggccgcagtttaggaacagctgacgtgcactttgagcggaaggcagatgccctg
aaagccatgaagcagtacaacggcgtccccttggacggccgccccatgaacatccaactc
gtcacgtcacagatcgatacacagcgaagacctgcacagagtgtaaacagaggcgggatg
actagaaaccgtggatctggaggttttggtggtggtggtggcacccggagaggcacacgt
gggggcagccggggcagaggcagaggcgccagcaggagttcaaagcagcagctttccgca
gaggagctggacgcccagctggacgcctataatgccagaatggacaccagctaa

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