Manis javanica (Malayan pangolin): 108395794
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Entry
108395794 CDS
T06054
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
108395794 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mjv04147
]
108395794 (COL18A1)
00535 Proteoglycans [BR:
mjv00535
]
108395794 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mjv00536
]
108395794 (COL18A1)
Exosome [BR:
mjv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108395794 (COL18A1)
Proteoglycans [BR:
mjv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
108395794 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mjv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108395794 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108395794
NCBI-ProteinID:
XP_036860864
LinkDB
All DBs
Position
3:complement(39829649..39918826)
Genome browser
AA seq
1776 aa
AA seq
DB search
MAPNPSGCLGLLLLTCCLTAAQVDLLSLNWLWSTRTAGPTADLVSVSRSSPSLQPTENTI
THVASRDAPTNPGTAPANPEPPLERLEADQDRASTAPLASTTSQDTKEENIAGVGAKILT
VAQGIRSFVRLWDNATPTDSTTRAKMPDSATPTDPLALPGPSGPPQENTAALWLGSGVHS
SPDSQGTAASTPPGAPQPPSSAGGPQAWLREPTVPPPPPGRASLSSVPGGTPSWEGQSSL
GQLQDSDSKGLSSVAHPGRQHGYRRGTPQPLPLVAGLLGARAGPSALSPDTPSELSHIPL
SALIGDSGAWSPYAANSVGPALVNDSVLLRADPLASAGQPPTGRCLPLPPSLPICGHLGI
GRSWLPNHLRHASGEEVQAAAQAWGSLLRTHCHRFLAWFFCLLLAPPCPPPGPPPCRQFC
EALEDACWSQLAGGGLPVPCASLPALEDGHCVFIGPAAGRVGAEVGLLQLLGEPLPQVED
PDVGLAYVFSSDAGGSQAARDLVPSPFFRDFSLLFHVRPATEGAGVLFAITDAAQAVVAL
GVRLAAAHAGHQEVQLLYSEPGAARTRVAASFRLPTLARRWTRLALIVDGAAAALYVDCE
EFQRAPLVRGPQGLELAPGARIFVAQAGGADPDKFQGMIAELVVRGDPRVSPLLCLEDND
DDDEVSGDLGSGLRESQELLVEAAGTPLRLNLPEAPPVTSPPLAGGGNVEDSRTEETEEA
TVSSLGAQTLRSDVVSRWDGSVRSPGSSLEQGSVEGQKEEPGAGVLPGPVDPQGPAGAAV
WSPEAQPVPGPQGPPGPPGPPGRDGSPGKDGETGNPGEDGKPGDTGPQGFPGTPGDVGPK
GEKGDPGLGPRGPPGPQGPPGPPGPSFRQDKLTFIDMEGSGFGSDLQSLRGPRGFPGPPG
PPGVPGLPGEPGRFGMNSSDIPGPAGLPGVPGRDGPPGHPGPQGPPGPPGRDGEPGKTGQ
KGSLGEAGAPGPKGSKGDPGPIGTPGENGLAGASGPAGPPGPPGPPGPPGLPGPGLAAGF
DDMEGSGGPFWPTVRGTEGPQGPPGPPGDKGEVGADGPPGFPGLPGKEGMAGTQGPKGDK
GTQGLKGDPGRDGVGQPGLPGPPGPPGPVIYASEQDVRTPPDWAGTLPQGVLAGVPGPEG
RPGFAGFPGPAGPKGDLGSTGPQGPPGLKGEKGEPGAVFGADGRVLPPAQKGAKGEPGFR
GPPGPYGRPGHKGEIGFPGRPGRPGVNGLKGEKGEPGLASVGFGVRGLPGPPGPPGPPGL
PGTPVYDSNVFMESGRPGPPGLPGYQGPSGPKGDKGDVGPPGPPGPFPSDLLRLEAEMKG
EKGDRGDAGQKGGKGEPGGGGFFSSSVPGPPGPPGYPGTPGPKGESIRGQPGPPGPQGPP
GIGQEGRQGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGASSGVRVWATY
QTMLDKVPDVPEGWLIFVAEREELYVRVRSGFRKVLLEARTPLPQGTDNEVAALQPPIVQ
LHEGNPYPRREHSHATVRPWRADDIRASVPRLPDFQPYPGAPHHSSYTHLRPARPTSTTA
HTHQDFQPVLHLVALNSPQPGSMRGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLYSI
VRRADRTGVPIVNLRDEALFPSWEALFSGSQGQLKPGARIFSFDSRDVLQHPACHPASGK
GPFLPEVASALGGARPGALMGRGSCRPQKSVWHGSDPGGRRLTQSYCETWRTEAAGATGQ
ASSLLAGRLLEQKATSCHSALIVLCIENSFMTSSTQ
NT seq
5331 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaaccccagcggctgcctcggcctgcttctgctcacctgctgcctcactgcg
gcccaggtcgacctgctgagcctgaactggctgtggtccactaggacagcagggcccaca
gctgacctggtctctgtgtcccggagcagtccctctctgcagcccacagagaataccatc
acgcatgtggcctcccgggatgcccccaccaatccggggacagcccctgccaaccctgag
ccacctctggaaaggctggaggctgaccaggacagagcctccacagccccccttgcctcc
accacgagccaggacacaaaggaggagaacattgctggtgtcggagccaagatcctgacc
gtggctcagggcatccggagcttcgtccggctgtgggacaacgccactcccaccgacagc
accacccgggccaagatgcctgactctgcgactcccacagaccccctcgctctgcctggg
ccatccggccccccccaggagaacacggctgctctctggctgggcagtggggtgcacagc
tctccggactcccaggggactgcggccagcaccccgccgggggccccccagccaccttcc
tctgcgggtgggccccaggcatggctcagggagcccacggtgccaccaccacccccaggt
agagcttctctctcctctgtgccgggtgggaccccttcctgggaaggccagtcatccctg
ggacagctccaggactcagacagcaaaggactctcgtctgtggcccatcccggccggcag
catggataccgcaggggcacgccacagccgcttcccctggtggcgggtttgctgggcgca
cgtgccgggccctcggctctctcccctgacactccctctgaactgtctcacatcccactc
tcagctttaattggggacagtggtgcttggtctccctacgcggctaattctgtggggcct
gctcttgttaatgactctgtgctgctcagggctgacccgctggcctccgccgggcagcct
cccacgggccgctgcctgcccctgccaccctccctgcccatctgcggccacctgggcatc
gggcgctcctggctgcccaaccacctccggcatgcaagtggtgaggaggtgcaggcagca
gcgcaggcctgggggagcctcctccggacgcactgccaccgcttcctcgcctggttcttc
tgcctgctgctggccccgccctgcccgccgcccggccccccgccctgccgccagttctgc
gaggccctggaggatgcgtgctggagccagctggctgggggcgggctgcccgttccctgc
gcctcgctcccggccctggaggacgggcactgtgtgttcattgggccggcggcaggccgc
gtgggcgccgaggtggggctcctgcagctgcttggggagcccctgccacaggtggaagac
ccagacgtcgggctggcctacgtgttcagctccgacgctggcggcagccaggcggcccgg
gacctcgtccccagccccttcttccgcgacttctcgctgctcttccacgtgcgcccggcc
accgagggcgcaggggtgctgttcgccattaccgacgctgctcaggccgtggtcgcgctg
ggcgtgaggctggcggccgcgcacgcggggcaccaggaggtgcagctcctctacagcgag
cccggcgcggcacgcacccgcgtggccgccagcttccgcctgcccaccctcgcccgccgg
tggacacgcctggcgctcatcgtggacggcgcagctgctgcgctctacgtggactgtgag
gagttccagcgggcgcccctggtgcgcggcccacagggcctggagctggcgcccggcgcc
cgtatcttcgtggctcaggctggaggagctgatcccgacaagttccagggcatgattgca
gagctggtggtgcgcggggacccccgtgtgagccccctgctctgcctggaggacaacgat
gatgacgatgaggtgtccggtgacttgggcagcgggctgcgggagtcccaggagctgctc
gtggaggcagcgggcacacccctgagactcaacctccccgaggctcccccggtcacttct
ccacccttggccggaggcggcaatgtggaagattccagaaccgaagaaactgaagaagcc
acagtgtcctcattaggagctcagaccctgcgctcagatgtggtctccaggtgggacggg
agtgtccggagccccgggagcagcctggagcagggaagcgtggaggggcagaaagaggag
ccaggtgctggggtcctgcccggcccagttgatccccagggccctgcaggcgcagcagtg
tggagccccgaagcacagcctgttcctgggccacagggcccccctgggccccccgggccg
ccagggagggatggcagccctgggaaggacggcgagaccggcaaccccggtgaagatgga
aaacccggggacactgggccacagggctttccggggaccccgggggatgtgggccccaaa
ggcgagaagggagaccctggccttgggccaagaggacccccaggaccccaagggcccccg
gggccaccaggaccctccttcaggcaggacaagctgaccttcatcgacatggaggggtcc
gggttcggcagtgacctgcagagcctccgaggcccaagaggcttccccggtcccccaggg
ccccctggcgtcccaggcctgcctggagagccaggccgctttgggatgaacagctctgac
atcccgggacccgcaggccttcctggcgtgcccgggcgggatgggccccccgggcaccct
ggtccccagggaccccctggtcctccaggaagagacggggaaccaggaaagaccggccag
aaaggcagcctcggtgaagcgggtgccccaggacctaagggaagcaagggagatcccgga
cccattggcactcctggggagaatggcttggcaggagcctctggaccagctggaccacca
gggcccccaggaccccctgggccccccgggctccctggaccaggactcgctgcaggattt
gatgacatggaaggctccgggggacccttctggccgacagtgcgaggcaccgaggggccg
cagggaccacccggccctcctggagacaagggagaagtaggagcagatggacctcccggc
ttccccggcctccctggcaaggagggcatggctgggacccagggaccaaaaggagacaaa
gggacccagggactgaagggcgacccggggcgggacggagtcgggcagccaggcctcccc
ggaccccccggacctccagggcccgtcatctacgcgtcagagcaggacgtaaggacgccg
cctgattgggctggcactctgccccagggagtgctggctggcgtgccgggacctgagggc
cggccagggttcgccggcttccccggaccagccgggccgaagggtgacctgggctccaca
ggcccgcagggcccgccgggactcaagggtgagaagggcgagccgggcgcagtgttcggc
gccgatggtagagtgctgccccctgcccagaagggtgccaagggagagcccggcttccga
ggacccccgggcccttacggacgccccgggcacaagggagagatcggtttccccggacgg
ccgggtcgccccggagtgaatggattgaaaggagagaagggggagccaggactcgccagc
gttggatttggagtgaggggtctgccgggccccccagggcctccggggcccccaggcctt
cctgggactcctgtgtatgacagcaacgtgtttatggagtctggccgcccaggacctcca
ggattgccagggtaccaggggccttctggacccaagggagacaaaggagacgtgggccct
cccggaccaccagggccattcccgtccgaccttctccggctggaggctgaaatgaagggc
gagaagggtgaccgaggggatgcaggacagaaaggaggaaagggcgagcctgggggtggc
ggattcttcagctccagtgtgcctggcccccccggcccccctggctaccctgggactcca
ggtcccaagggagagagcatccggggccagcccggcccacctggacctcaggggccccct
ggcatcggccaggaggggcgccaggggcctcctgggccccctggccccccaggcccccct
tcctttcctggcccttacaggcaaactatcagcgttcctgggcctccaggacccccgggg
cccccggggccccctggaaccatgggcgcctcctcaggggtgcgcgtctgggccacgtac
cagaccatgctggataaggtgcccgacgtgcctgagggctggctcatcttcgtggctgag
agggaggagctgtacgtgcgggtccgcagtggcttccggaaggtcctgctggaggcccgg
acgccactccctcaggggacggacaatgaagtggctgccctgcagccccccatagtgcag
ctccacgagggcaatccgtacccccggcgggagcactcccacgccacagtgcggccctgg
cgggcagatgacatccgggccagcgtccctcgcttgccagacttccagccctatcctgga
gccccacaccacagctcctacacgcacctccggccggcacgccccaccagcacaactgcc
cacacccaccaggacttccagccggtgctccacctggtcgcgctcaacagcccacagcca
ggcagcatgcgaggcatccgtggggccgacttccagtgcttccagcaggcacgtgctgtg
gggctggctggcaccttccgtgccttcctgtcctcacggctgcaggacctctacagcatt
gtgcgccgtgccgaccgcacaggcgtgcccatcgtcaacctcagggacgaggcgctgttt
cccagctgggaggccttgttctccggctctcagggccagctgaagcccggggcccgcatc
ttctcttttgacagcagagacgtcctgcagcaccccgcctgccaccctgcctctgggaag
ggccctttcctgcctgaggtggcctctgccctgggaggagccaggccaggggcactgatg
ggccgcgggtcctgcaggccccagaagagtgtgtggcacggttcagacccgggcgggcgc
cggctcactcagagctactgtgaaacctggcggaccgaggccgccggcgccaccggccag
gcctcctcactgctggcaggcaggctgctggagcagaaagccacaagctgccacagtgcc
ctcatcgtcctctgcatagagaacagcttcatgacctcctccacccagtag
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