Manis javanica (Malayan pangolin): 108397188
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Entry
108397188 CDS
T06054
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
mjv
Manis javanica (Malayan pangolin)
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mjv03036
]
108397188 (SHOC1)
Chromosome and associated proteins [BR:
mjv03036
]
Eukaryotic type
Meiosis-specific proteins
Others
108397188 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
RVT_3
Motif
Other DBs
NCBI-GeneID:
108397188
NCBI-ProteinID:
XP_036846502
LinkDB
All DBs
Position
Unknown
AA seq
1449 aa
AA seq
DB search
MKDTSILDQWKASLLVEEFLEKKTITGKAIHINCEFEVVPSSNPNSQTEVEEASLYTHKD
YNEVFTLVSCSEKYPALQAQNQDLSIDDEELIFENNLVDYKSQLPTLHTLLSRLKLFLVK
DPLLDFNKQIFTEANYLRECFSFPRDFKVLVNEDGYVDKENFCQEKLEDTPSILLECEFL
ISTSHKQEVDMPSLSELKESLNLMPEIINFIDENEKLFKKDLTTKHRINIEDIKCSSTEI
LINQSQYESECGKPECSKPVELEMPLTHLHLASQYSPVNSLCTELETFPFSSVGKISLLT
AEESASRNCTVSQLESCRSSLNSFFLTVPRIEEPNSQYSVADLKRILSIEEENLVVNPVG
TEWWKQAGLNLIMTATLEHLNMYLCHDDLSTGDTTKEIFLPTEVLQLESWLEPTSCSSPI
ILINETSTNDHLSLSQKSPALAKEVPDLCFSDEYISVERPTKEEKPKNDLELVYRINKNK
ENEDYLELDCTVPPIESSCSSKIEKASLKLGKKQENDLDLLSDFILLRNKYKTCTSKTDI
THRDENDEFRDKEEHSLTLQEESPIICTNKTQEDINQERSTSHVIESQASDSQCQAYCLL
EAAATPILKKLAFLCSLPAANWKFATVIFDQTRFLLKEQEKLMSDAIHQGTNDEREMILK
HAALLHLLVTIRDVLLTCSLDTALEYLSSAKDIYRSILGSYLDDIWRQLEIVQFIKGKNP
ETNYKIQKLQHQILNWMQSEQQIKVLIIVRMDSDGEKHLLIKILNKMEGLTLTVLHSNKR
KNFLESEGVLNGTSSCVVVYNQYIGADFPWSNFSFVVEYNFVEDSCWAKHCKKLNIPYTT
FKVILPDTVLKRSTLLDHFGGFLLEIQIPYVFFASEGLLNTSEILKLLESNYNITLMERC
YGESLKLFGDTQHYVVLTIDEHTAIILQDLEELNCEKASDNIIMRLMALSFQYSYCWIIL
YNKNTLNSEYHLTERTLHHLALIYAALVSFGLKSEELDVKLIIVPGVEETALIIRQIADH
SLMTSKKDPHEWLDKSWLEVSPSQEEMYLLDFPCINPLVAQLMLNKGPSLHWILLATLCQ
LQELLPEVPEKVLKDFCSITSLFKINSSSITKSPQMSSPQESRTQTSTFTSQSSASGFSN
SAIQEQNDYFQYSDLGGTVHEDTNTTSKYNSSLMELREMPGILPPVTSYNQINHQEDSSC
NRIIVQNNLFLRNTESRNAKGNSFLNKNEPLTDVFSLGLTQMNCETIISPIDTQKKFAPN
FKNCQKKGTFEAKGPINKEVSAPIFSLEGSQSPLHWNFKKNVWEQQNHLFNLQYGAKQTT
SDKRYSQKDNLFTNQQKCLSVDSDSFIHESSSAGTEKTFCRELPSVPSLDLFCASDSNIN
QKEFNSLYFHQKAGKSLGQKRPSESSSDSGDKKSLTDFMHSQLPQFKKRRLVYEKVPGRA
DGQTRLRFF
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacacctcaattttggatcaatggaaagcaagtctccttgtggaggagttcctt
gagaaaaaaacaattacaggaaaggcgatccatattaactgtgaatttgaagttgttcca
agttcaaatccaaactcccaaactgaagtagaggaagccagcttatacacccataaggac
tacaatgaagtctttacacttgtcagctgttcagaaaaatatccagcacttcaagcacag
aaccaagatttgtctattgatgatgaagaattaatttttgaaaataacttggtagactat
aaaagtcagctaccaactttgcatactctgttgagtaggctaaaactatttttagtaaag
gacccccttttggatttcaacaaacaaatcttcacagaagctaattatctcagggaatgt
ttctcttttccaagagattttaaagttcttgtgaacgaagatggatatgtggataaagag
aacttttgtcaggagaagttagaagatacaccgtcaattttgcttgagtgtgaattctta
atatctacaagccacaaacaagaagttgatatgccatcactctcagaactaaaggagtca
ttaaacttaatgccagaaataataaattttatagatgaaaatgaaaagcttttcaaaaaa
gatcttactaccaagcatagaattaacattgaggatataaaatgcagctccacagagatt
ttgatcaatcaaagccagtatgaatcagagtgcggtaaaccagaatgcagtaaaccagta
gagttagaaatgccattaactcatctacatctagcaagccaatattctcctgtgaattcg
ctatgtacagaacttgagacatttccattttcttctgttggtaaaattagtttgcttact
gctgaagaatcagctagcagaaactgtacggtgtcacagttagaaagctgcagaagctct
ttgaactcatttttccttacagtgccaagaattgaagaacccaacagtcaatattcagtt
gcagatttgaaaaggatactttctattgaagaagaaaaccttgtagtaaaccctgtaggc
acggagtggtggaagcaagcaggactaaatctgataatgacagcaactctggaacatctg
aatatgtatttatgtcatgatgatctctctactggtgatactacaaaggagatattttta
cctacagaagtgcttcaattagaatcatggctagaacctacaagttgttcctcacctatt
atacttattaatgagacatctacaaatgatcatttatcactttcacaaaagagtccagct
ctggcaaaagaagtaccagacctgtgtttttctgatgaatatatctctgttgaaagacca
acaaaagaagaaaaaccaaagaatgatctagaactagtttatagaataaataaaaataaa
gaaaatgaagattacttggaacttgactgcacagtaccacctatcgaatcatcttgctct
tcaaaaattgaaaaagcatcgcttaaacttggtaaaaagcaggagaatgatttggacctt
ttgagcgactttattttgctgcgaaataagtataagacttgcacctcaaagactgacatc
acacatagggatgaaaatgatgaatttcgagataaagaagaacattctctgactcttcaa
gaagaaagtcctattatttgtactaataaaacccaagaggatataaatcaggaaaggagc
acaagtcatgtcattgaaagtcaagcatcagatagccagtgccaagcatactgtctccta
gaagcagcagctacccctatcttaaaaaaacttgcattcctctgtagtctgcctgctgct
aattggaaatttgccaccgttatttttgaccaaacaaggttcctcttaaaggaacaagaa
aaattaatgagtgatgctattcaccaaggtacaaatgatgaaagagaaatgatactcaag
catgccgctctcttacaccttctggtaacaattagagatgtccttttaacatgtagcttg
gacacagcattggaatatttgtcaagtgcaaaagatatctacagaagtattttaggctct
tatttggatgacatttggagacagctagagattgtacagtttattaaggggaaaaatcct
gaaaccaactataaaatacaaaaattgcagcatcagatactaaattggatgcaaagtgaa
cagcaaattaaggtgttgattatagtaagaatggactcagacggtgaaaaacatttactc
attaaaatccttaacaaaatggaaggtttaacactgactgtcttacattcgaacaaaaga
aaaaatttcctggaatctgaaggtgttttaaatggcacaagttcctgtgtagttgtatat
aatcaatatattggagcagattttccctggagtaatttctcatttgtggtggaatacaat
tttgtagaagactcttgttgggctaaacactgcaaaaaactgaatattccttatacgacc
tttaaagtgatacttccagacacagttttaaagagaagcaccttgctggatcattttggt
ggttttcttttggaaattcagattccatatgtgttttttgcatctgaaggacttcttaat
acttcagaaatacttaagttgctagaatccaactataatatcacactaatggagagatgc
tacggtgagtcattgaaactctttggagatacacagcattatgtagtactgacaattgat
gaacacactgccataattttgcaggacctagaagaattgaattgtgagaaggcatcagac
aatatcattatgagactgatggcattatcgttccagtacagctattgttggataatttta
tataacaaaaatacattaaattcagaataccaccttacagaaaggacacttcatcacttg
gcactgatttatgcagctttggtttcatttgggctaaaatcagaagaactggatgtcaag
cttataattgtcccaggagtggaagagactgcattgataattcgacaaattgctgaccac
agtttgatgacctcaaagaaagatcctcatgaatggttggataaatcctggcttgaagtt
tcaccttctcaggaagagatgtacttacttgattttccatgtattaacccattggtggct
cagctcatgttgaataaaggaccttcactacactggatattattagcaactctttgtcaa
ctccaggaactcctacctgaagttccagaaaaagtgctaaaggatttttgtagcatcact
tccttattcaagattaattcttcttcaataacaaaatcacctcaaatgtcatcacctcag
gaaagtaggactcagactagtacctttacttctcagagttcagcttctggtttttcgaac
tctgccattcaagaacaaaatgactatttccagtattcagacttaggagggacagtgcat
gaagatacaaataccacttcaaagtacaactcttcccttatggaactcagagaaatgcca
ggcattttaccacctgtgacttcttacaatcagattaaccaccaggaagactccagttgt
aaccgtatcatagtgcagaataatcttttcctaagaaatacagaatcaagaaatgcaaaa
ggtaactcctttctaaacaagaatgagccactgacagatgtattttctttgggtctaaca
caaatgaattgtgaaaccataatatcaccaattgatactcagaagaaatttgcccctaat
tttaaaaactgtcagaaaaagggaacatttgaagcaaaaggacctataaataaagaagta
tctgcccctatcttttcattagagggctcacaatctcctcttcactggaacttcaagaaa
aatgtgtgggaacaacagaatcacttattcaatttacagtatggcgcaaagcagactaca
agtgacaaacggtactctcagaaagataacttattcactaatcagcaaaaatgtctatca
gttgattcagacagcttcatacatgaaagttcaagtgctgggactgaaaagactttctgt
agagaattaccgtctgtccccagtttggatctattttgtgcttctgattctaacataaat
caaaaagaattcaacagtctttatttccaccaaaaagctggaaaaagtttaggacagaaa
aggccctctgaatcttcatctgactcaggagacaagaaatcattaacagatttcatgcac
tctcaactaccacaattcaaaaaaagacgtctagtgtatgaaaaagtccctggtagagct
gatggacaaactcgtctgaggtttttttga
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