Manis javanica (Malayan pangolin): 108398132
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Entry
108398132 CDS
T06054
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03082
ATP-dependent chromatin remodeling
mjv04714
Thermogenesis
mjv05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108398132 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
108398132 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
108398132 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjv03021
]
108398132 (SMARCC2)
03036 Chromosome and associated proteins [BR:
mjv03036
]
108398132 (SMARCC2)
Transcription machinery [BR:
mjv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108398132 (SMARCC2)
Chromosome and associated proteins [BR:
mjv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108398132 (SMARCC2)
PBAF complex
108398132 (SMARCC2)
GBAF(ncBAF) complex
108398132 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
108398132
NCBI-ProteinID:
XP_036864832
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRRVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNIEEVTLPKT
VTKKDSESAPVKGGTVTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQT
HHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYL
TSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGL
VPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLSFPDKGKEKPA
DMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGSR
TQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAS
AAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGRVDPAFGLESSGIAGTASEEPER
ISTEESGTDEVRAEGQSTEEKKEPKEPREGVGAVEEEAKEKTGEVPKKDEEKGRQGDSEK
ESEKSDGDLVVDPEKEKEPKEGPEEVLKETVESEGDRKAKVERDIGEGNLSTAAAAALAA
AAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLL
ADRQAFHMEQLKYAEMRARQQHFQQMHHVQPQAAPPPGAQPLPPTGAGPPTSHGLAMAPA
SVAPAPASSGAPPGSLGPSEQIGQAGSSAGPQQQQAAGAPQPGAIPPGVPPPGPHGPSPF
PSQQAPPSVIPGAVPGSGHPGMAGNAPLGLPFGMLPPPPPPAPSILPFGSLADSISINLP
PPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSPA
IVAAVQGNLLPSASPLPDPSTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggatggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaaaaactacaagaagtacattcaa
gccgagccacccaccaacaagtccctgtctagcctggtcgtgcagctgctgcaatttcag
gaagaagtttttggcaaacatgtcagtaacgcaccactcacgaaactgccgatcaaatgt
ttcctcgatttcaaagcaggaggatccttgtgccacatcctcgcagctgcctacaaattc
aagagtgaccagggatggcggcgttatgatttccagaatccgtcacgcatggaccgcaac
gtggaaatgttcatgaccattgagaagtccttagtgcagaataattgcctgtctcgacct
aacatttttctgtgcccagaaattgaacccaaactgctagggaaattaaaggacattatc
aagagacaccagggaacagtcactgaggataagaacaatgcctcccatgttgtgtatcct
gtcccagggaacctagaagaagaggaatgggtacgaccggtcatgaagagggacaagcag
gttcttctgcactggggatactatcctgatagttatgacacatggatcccagcgagtgaa
attgaagcatctgtggaagatgctccaactcctgagaaacctaggagggttcatgcaaag
tggatcctggacacagataccttcaatgaatggatgaatgaagaagactatgaagtaaat
gatgacaaaaatcctgtctcccgccgaaagaagatttcagccaagactttgacagatgag
gtgaacagcccagattcagatcggagggacaagaagggggggaactataagaagaggaag
cgctccccttctccttcaccaaccccagaggctaagaagaaaaatgctaagaaaggtccc
tcaacaccttacaccaagtcaaagcgtggccacagagaagaggaacaagaagatctgacg
aaggacatggatgagccctccccagtccccaacatagaagaggtgacattgcccaaaaca
gtcacaaagaaggactcggagtcagccccagtcaagggaggcacagtgactgacctggat
gagcaggaggatgaaagcatggagaccacgggcaaggatgaggatgaaaacagtacgggg
aacaagggggagcagaccaagaatccagacctgcatgaagacaacgtgactgaacagacc
caccatatcatcattcctagctacgctgcctggtttgactataatagtgttcatgccatt
gagcggagggctctccctgagttctttaacggcaagaacaagtccaagactccagaaatc
tacctggcctatcgaaacttcatgattgacacttaccggctgaacccccaggagtatctc
acctctactgcctgccgtaggaacctggcgggtgatgtctgtgccatcatgagggtccat
gccttcctggaacagtggggtctcattaactaccaggtggatgccgagagccgaccaacc
ccaatggggcctccacccacctctcacttccacgtcttggcagacacaccatcagggctg
gtgcctctacagcccaagaccccacagggccgccaggttgatgctgataccaaggctggg
cgaaagggcaaagagttggatgacctggtgccagagacggctaagggcaagccagagctg
cagacctctgcttctcagcaaatgctcagcttccctgacaaaggtaaagagaagcctgca
gacatgcagaactttgggctacgcacagacatgtacacaaagaagaatgtgccctccaag
agcaaagctgcagccagtgccactcgagagtggacagaacaggagaccctgcttcttctg
gaggccctggaaatgtacaaagatgactggaacaaagtatcagagcacgtgggcagccgc
acacaggacgagtgcatcttgcattttcttcgtcttcccatcgaagacccatacctggag
gactcagaggcctccctgggccccctggcctaccagcccatccccttcagtcagtcaggc
aaccctgttatgagtactgttgccttcctggcctctgtggttgatcctcgagtcgcctct
gctgccgccaagtcagccctagaagagttctccaaaatgaaggaagaggtacccacggcc
ttggtggaggcccatgttcggaaagtggaggaagcagccaaggtgacaggcagggttgac
ccagcctttggcctggagagcagtggtattgcaggaactgcctcggaggagcctgagcgg
atcagcacagaggagagcgggactgatgaggtgcgggcagagggccagtccacagaagag
aagaaggagcccaaggaaccccgagaaggagttggggctgttgaggaagaagcaaaggag
aagactggagaggttcccaagaaggatgaagagaaagggaggcagggcgatagcgagaag
gagtcagagaagagcgatggcgacctagtggttgaccccgagaaggagaaggagccaaag
gaagggccggaggaagtgctgaaggaaactgtggagtcagagggggacaggaaggcgaaa
gtggagcgggacatcggcgagggcaacctctccacggcggcagccgctgccctggccgct
gccgctgtgaaggccaagcacttggctgctgttgaggagaggaagatcaaatctctggtg
gccttgctggtggagacccagatgaaaaagttggagattaaactccggcactttgaggag
ctggagacgatcatggaccgagagcgagaagcactggagtatcagaggcagcagctcctg
gcggacagacaagccttccacatggagcagttgaagtatgcagagatgagggccaggcag
cagcatttccagcagatgcaccacgtgcagccgcaggcagccccgcccccaggcgcccag
cccctcccacccacaggtgcagggccacccactagccacggcttggctatggctccagcc
tctgtggctcctgcccctgctagtagtggggcccctcctggaagcttgggcccctctgaa
cagattgggcaggcgggatcatctgcagggccacagcagcagcaagcagctggagccccc
cagcctggggcaatcccaccaggggtacccccccctggaccccatggcccctcgccattc
cccagccaacaagctcctccctcagtgatacctggggcagtgccaggcagcgggcaccca
ggcatggcgggtaatgctcctttgggtctgcctttcggcatgctgcctcctcctcctcct
cctgctccatccatcctcccatttggtagtctagccgactccatcagtattaacctgcct
cctcctaacctgcatgggcatcatcaccatctcccattcgccccgggcactctcccccca
cctaacctgcctgtgtccatggcgaaccctctacaccctaacctgccagcgaccaccacc
atgccatcctccttgcctctggggccggggctcggatccgccgcagcccagagccctgcc
attgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagacccaagc
acccccctgcctccagaccccacagccccgagcccaggcacagtcacccctgtgccacct
ccacagtga
DBGET
integrated database retrieval system
