Manis javanica (Malayan pangolin): 108398510
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Entry
108398510 CDS
T06054
Symbol
SMG8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
mjv
Manis javanica (Malayan pangolin)
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjv03019
]
108398510 (SMG8)
Messenger RNA biogenesis [BR:
mjv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
108398510 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
108398510
NCBI-ProteinID:
XP_017518073
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All DBs
Position
4:complement(147772585..147777097)
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AA seq
988 aa
AA seq
DB search
MAGPVSLKELLMGAAAWTGPESPEGSPAEGGASVASGPEPPWREDEICVVGIFGKTALRL
NSVKFSLVNTVCDRQIFPLFRHQEPGDPEPAIRTESGAAGEAGEAGDPGAGAGDPGVAAA
EGNRTEPGSQDYSLLQAYYNQESKVLYLLLTSICDNSQLLQACRALQSGEAGGGLSLPHA
EAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKT
AIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRSQDPTHPDKPKKHSPKRRLQHA
LEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCTVKD
PESLLVPAPLSGPRRYQVMRQHSRQQLSFHVDSSSSSSSGQLVDFTLREFLWQHVELVLS
KKGFDDSVGRNPQPSHFELPTYQKWISAASKLYEVAIDGKEEDLGSPTGELTSKILSSIK
VLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPA
FHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNS
RARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPA
KNESSPAPADAEADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNPEVH
GQGEVKTEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGL
DQQGFVPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRDDIA
RAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPH
YAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTE
RGPCFPPKENVQLMSYKVLRGVLKAVTQ
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtcctgtcagcttgaaagagcttctaatgggagctgcagcctggactggccct
gaaagtcccgaagggtcccctgcagagggtggggcgagcgtggctagcggaccggagcct
ccttggcgtgaggatgagatctgcgtggtggggatcttcggtaaaacggctctgcggctg
aattccgttaagttctcccttgtgaacacggtgtgcgatcgacagatctttccccttttt
cgccaccaagaacccggggacccagaaccggcaatcaggaccgagtctggcgctgctggg
gaggctggtgaagccggggaccctggcgctggggctggggatccaggtgtagctgccgcg
gaaggtaaccgaactgagccaggttcccaggactacagccttctgcaggcctattacaat
caggaaagcaaagttctgtatcttcttctcacttcaatctgtgataactcccagcttctg
caggcttgtcgggcccttcagagcggggaagctggaggtggtctctctttacctcatgca
gaagcacacgaattctggaagcatcaagagaagctgcagtgcctcagtctcctttacctt
ttctccgtctgtcacattctgctgctggtccatcccacttgttcctttgacatcacctat
gatcgagtgttcagagcgctggatggactgagacagaaagtattgcccctcctcaaaaca
gccattaaggattgcccagttggcaaagattggaagctaaactgccgaccttgcccacct
agactccttttcctcttccaactcaatggagccctcaaggtggaaccccctcgcagccaa
gacccaactcatccagacaagcccaagaagcattctcccaaaaggagactgcagcatgcc
ctagaggaccagatctatcgaatcttccggaaaagtcgagttttgaccaatcagagtatc
aactgcctctttactgttcctgccaaccaagcttttgtgtacatagttcccggaagccag
gaggaggatccagtaggcatgttgctggaccaacttaggagtcattgtaccgtgaaggac
ccagaatctttgctggtgcctgcacccctctctgggcccaggcgataccaagtgatgagg
cagcacagccgacagcagctttcctttcacgtagacagcagcagttccagttcttcaggg
cagctagtggattttactcttcgggaatttctgtggcagcacgtggagctagttctaagc
aagaaaggttttgatgacagtgtgggaaggaacccacagccttcccattttgagcttccc
acttatcagaagtggatctcagcagcttcaaaactgtatgaagtagctattgacgggaaa
gaggaggacctagggtctcctactggggagttaacatctaagattttaagcagtattaaa
gttttggaagggtttttggatattgacaccaaattctcagaaaaccggtgccaaaaagct
ttacccatggctcatagtgcttatcagtcaaatttgcctcataattacacaatgactgtc
cataagaatcagcttgctcaggctcttcgagtgtacagtcaacatgctagggggccagcc
ttccacaaatacgctatgcagttacatgaagactgctacaaattttggagtaatggccat
cagctctgtgaggagaggagtttaactgatcaacactgtgtccataaatttcactcatta
cctaaatcaggagaaaaaccagaggctgatagaaatcctcctgtgctatatcacaatagc
cgagcccggtctactggtgcctgtaactgtggaaggaaacaagcacctcgagatgatccc
tttgatattaaggcagctaactatgacttttaccagcttctggaagaaaaatgttgtgga
aaattggatcatatcaatttcccagtatttgaaccaagtactccagatcctgctcctgcc
aaaaatgaatcttctcctgcccctgcagatgcagaggctgataaacttaaagaaaaagaa
cctcaaacccaaggggagagcacaagcctaagtttagctttgagtttaggccagtccaca
gatagtttaggtacttatccagcagatccacaagcagggggagataatccagaagttcat
ggtcaaggagaagtaaaaactgagaagagaccaaacttggttgatagacaggcatccaca
gttgagtatctgccaggcatgctccattcaaactgccctaaaggtctccttcccaagttc
tccagttggtctttggttaaactgggccctgctaagtcttacaactttcatacaggttta
gatcaacagggctttgttccaggaacaaactatcttatgccttgggacattgtcatcagg
actagagctgaagatgaaggtgacttagacacaaattcttggcctgctccaaataaagct
attcctggaaagagaagtgcagttgtaatgggaagaggaagacggcgagatgacatagct
cgggcatttgtgggctttgaatatgaagactctcgaggtcggaggtttatgtgctcagga
cctgacaaagtaatgaaagtaatgggaagtgggccaaaggaatcagctttaaaagccctg
aatagtgatatgcccttatatattctgtcatcttctcagggaagagggctaaaaccacat
tatgctcaacttatgaggctttttgttgtagttcctgatgcacctttacagataatccta
atgcctcaggttcaaccaggcccaccaccatgtccagtattctacccagaaaaacaagaa
atcactctcccacctgatggtctctgggttttgagatttccttatgcatatgtgactgag
agaggaccttgtttccctccaaaggaaaacgtgcagttgatgagttacaaggtgctacgt
ggggtccttaaagcagtaacacaataa
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