Manis javanica (Malayan pangolin): 108406000
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Entry
108406000 CDS
T06054
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X8
KO
K12821
pre-mRNA-processing factor 40
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108406000 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mjv03041
]
108406000 (PRPF40A)
Spliceosome [BR:
mjv03041
]
Complex A
U1 snRNP components
U1 related factors
108406000 (PRPF40A)
Complex B
108406000 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
108406000
NCBI-ProteinID:
XP_017529948
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MCSGSGRRRSSLNPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSSLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMPGMMMSHMSQASMQPALPPGVNNMDVATGTASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGSLITKSNLHAMIKVEESSKQEECITAATAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAAAAASASSSTSASNTVSGTVSVVPEPEVTSIVATVVDNENTVTISTEEQAQLTST
PAQDQSAEVSSNTGEEASKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKE
KRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKES
FQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQL
RKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRF
TNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAI
ISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIE
LDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHH
RKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHK
SDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGEL
EKRRRTLLEQLDDDQ
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccggcggagcagtctgaacccgacgatgaggccgggaacg
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagactgtccggctcaagcctctgctccagctcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcaccctggcatgcattatgcccca
atgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatggaatgatg
ccgcaaatgatgcctcctatgggagggccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgcctta
ccgccaggagtaaataatatggatgtagcaacaggcacagcatctggcgcaaaatcaatg
tggactgaacataaatcacctgatgggaggacttactactacaatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaacacctgctgagcaacttttatctaaatgc
ccctggaaggagtacaaatctgactctggaaagccttactattacaattctcagacaaaa
gaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagtggaagaaagc
agtaagcaagaagagtgcatcacagcagcaacagccccagttcctacaacagaaattcca
accacaatgagcaccatggcggctgcagaagcagccgctgctgttgtggcagccgccgcc
gcagctgcagctgccgccgccgcagccagtgccagttcttccacctctgcttccaacact
gtcagtggaactgtttcagttgttcctgagcctgaagttacttcaattgttgctactgtt
gtagataatgaaaatacagtaacaatctcaactgaagaacaagcacagctcactagtact
cctgctcaggatcaaagtgctgaagtatcgagtaacactggagaagaagcatctaagcag
gaaactgtagctgattttactcccaaaaaagaagaggaggaaagccaaccagcaaaaaaa
acatatacttggaatacaaaggaggaagcaaagcaagcatttaaagaattattgaaagaa
aagcgggtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatcca
cggtacagtgctttagcgaagttgagtgaaaaaaagcaggcctttaatgcttacaaagtc
cagacagagaaagaagaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcc
tttcagcgttttcttgaaaatcatgagaaaatgacttccacaaccagatataaaaaagca
gagcaaatgtttggagagatggaagtttggaatgcaatatcagaacgtgatcgtcttgaa
atctatgaagatgttttattcttcctttcaaaaaaagaaaaggagcaagcaaagcaattg
agaaagagaaattgggaagcattaaaaaacatacttgacaacatggctaatgtaacatac
tctactacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagat
gaagaattacagaacatggataaagaagatgcattaatttgctttgaagaacacattcgg
gctttggaaaaagaagaagaagaagaaaaacagaagagtttgctgagagaaaggagacgt
cagcgtaaaaatagagagtcttttcagatatttttagatgaactgcatgaacatggacaa
ctgcattctatgtcatcttggatggaattgtatccaacaattagttctgacattagattc
actaacatgcttggtcagccggttttttcattaggatcaaccgcacttgaccttttcaag
ttttatgttgaggatcttaaagcacgttatcatgatgagaagaagataataaaagacatt
ctaaaggataaaggatttgtagttgaagtaaataccacttttgaagactttgtggcaata
atcagctcaactaaaagatcaaccacgttagatgccggaaatattaaattggctttcaat
agtttattagaaaaggcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaag
atgaaacgaaaagaatctgcatttaagagtatgttgaaacaagccacgcctccaatagaa
ttggatgccgtctgggaagatattcgggagagatttgtaaaagagccagcattcgaggac
ataactctggagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcat
gaatgtcaacatcatcattcaaagaataagaaacattctaaaaaatctaaaaaacatcac
aggaaacgttctcgctctagatcggggtcagattcagatgatgatgacagccattcaaag
aaaaagagacagcgatcagagtctcgttctgcctcagagcattcttctagtgctgagtct
gagagaagttataagaagtcgaaaaaacataagaagaaaagcaagaagaggagacataaa
tctgattctccagagtcagatgctgagcgagagaaggacaaaaaagaaaaagaccgggaa
agtgaaaaagacagaaccagacaaagatcagaatcaaaacacaaatcacctaagaaaaag
actggaaaggattctggtaattgggatacttctggcagtgaactgagtgaaggggaattg
gaaaagcgcagaaggacccttctggagcaactggatgatgatcaataa
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