KEGG   Manis javanica (Malayan pangolin): 108408289
Entry
108408289         CDS       T06054                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
mjv  Manis javanica (Malayan pangolin)
Pathway
mjv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mjv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108408289 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mjv03041]
    108408289 (SNRNP40)
Spliceosome [BR:mjv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    108408289 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    108408289 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 108408289
NCBI-ProteinID: XP_017533709
LinkDB
Position
Unknown
AA seq 358 aa
MIEQQKRKAPELPLVPVKRQRHELLLGAAGSGPGTGQPQAAPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYAMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatagagcagcagaaacgcaaggccccagagttgccgctggtcccagtcaagcgacag
cggcatgagttgcttttgggagcggcggggtcgggtcccggcacagggcagccgcaggca
gctccgggagctttgctgcaggcggggcctccaaggtgttcctcccttcaagccccaatc
atgctcctctcaggacatgaaggggaagtgtactgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatactgttgtggaatgtctatggtgactgt
gataactatgcgacattgaagggacacagtggagcagtaatggaactacattataataca
gatggcagcatgctcttctcagcatccacagataaaactgtggcagtatgggatagtgaa
acaggcgagagggttaaaaggctgaaaggacatacttcctttgtgaattcctgttatcca
gccagacggggcccccagcttgtctgcactggcagtgatgatggtacggttaagctttgg
gacatccggaaaaaagcggccatccagacatttcagaacacctaccaggtgttagctgtg
accttcaatgacacaagtgatcagattatttctggtggaatagacaacgatatcaaggtc
tgggacctgcgccagaacaagctgacctatgccatgagaggccatgcagattctgtgact
ggcctgagtttaagttcggaaggctcttacctcttgtctaatgcaatggacaatacagtg
cgggtctgggatgttcggccatttgctcccaaagagaggtgtgtgaagatatttcaagga
aatgtgcacaactttgaaaaaaatcttctgcgatgttcttggtcacctgatggaagcaag
atagcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggaggatt
ttgtataagctgcctggacatgctggctccatcaatgaagtggctttccaccctgacgag
cccatcattctctcggcatccagtgacaagagactctatatgggggagattcagtga

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