Manis javanica (Malayan pangolin): 108408473
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Entry
108408473 CDS
T06054
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108408473 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mjv03041
]
108408473 (PRPF40B)
Spliceosome [BR:
mjv03041
]
Complex A
U1 snRNP components
U1 related factors
108408473 (PRPF40B)
Complex B
108408473 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
RhoGAP-FF1
DUF4936
Motif
Other DBs
NCBI-GeneID:
108408473
NCBI-ProteinID:
XP_036847971
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MNSSVQLLGLGASVRDPAAPSAVQGGGASRAAEAGKQRTQVWRRWEGRAEKQIYERAQSR
RSVGFVQHSVGRHSESGAGTPRPQVGGPGTRWRGGGAWFSAPGAGTGPGSPGRCRARLVR
GSDRSHGHQGVRPPTGPAFPAAVQPIRAAFTGGWAEPAQLLGGSGMSVPDSGPRPPAAPA
PFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGIMPPMLPPMGAPPPLT
QIPGMVPPMMPGMLMPAVPVTAATAPGADTASSVVAGTGPPRALWSEHVAPDGRIYYYNA
DDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKSYYYNNRSKESRWTRPKDLDDLEAL
VKQEAAGKQQQQPPQPPQPQPDPPPVPPGPTSVPTSILEPEPGGSEDCNMSEAVQPVEQG
FLQQLEEGPSSSGQHQPPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNAS
WEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLKAKEAKQTLQHFLEQH
ERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQAL
KSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEE
ERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPG
STPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDA
GNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPAVELGTAWEEVRERF
VCDSAFEQITLESERIRLFREFLQVLETECQHLHTKGRKHSRKGKKHHRKRSHSPSEGDF
FGPRSSSQSPVPRLKGSRGQSASALTCICWSAQGSESEEEELPPPSLRPPKRRRRNPSES
GSEPSSSLDSVESGGAALGGRGSPSSRLFLGSDHGLRKAKKPKKKTKKRRHKSNSPESET
DPEEKAGKESDEKEPEQDKDRELRRAELPNRSPAFGIKKEKTGWDTSESELSEGELERRR
RTLLQQLDDHQ
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaattcttcggtccagctcctgggtctcggagcgagcgtgcgggatccagccgctccg
agcgctgtgcagggcggaggcgccagccgtgccgcggaggccgggaagcagcggacccag
gtctggaggcgatgggagggaagggcagaaaagcagatttatgagcgcgcgcagagccgg
cgctcagtcggctttgtgcaacacagcgtcggccgtcactcggagtccggagcgggcacg
ccccgcccccaggtgggcggacccgggacccggtggcgcgggggcggggcctggttctcc
gcgccgggggcggggacgggcccgggttctccgggccggtgcagggcccggctggtccgc
gggagcgaccggagccacggccaccaaggggtgcgaccccccactggccccgccttcccg
gctgcggtccagccaatcagagcagcttttactggcgggtgggccgagccggcccagctg
ctcggaggctctggcatgtcggttcccgattctggtccccggcccccagcagcgcctgcc
cccttcccaccggggccccccatgatgccaccgcccttcatgccccctccaggaatcccc
ccaccctttcctccaatggggctgccccccatgagtcagagaccaccagccatcccccct
atgccacctggtatcatgcccccaatgcttccaccaatgggggcgccacctccactcaca
cagataccaggaatggtgcctcccatgatgccaggaatgctgatgccagcggtacctgtc
accgccgcgacggctccgggtgcggacaccgccagctctgttgtggctgggacaggtcct
ccgagggctctatggagtgagcatgtggcccctgatgggcgcatctactactacaatgct
gacgacaagcagtccgtgtgggagaagcccagcgtgctcaagtccaaggcagagctgctg
ctgtcccagtgtccctggaaagagtacaagtctgacacaggcaaatcttactattacaac
aaccggagcaaggaatcccgctggactcggcccaaggacctggatgacctggaggctcta
gtcaaacaagaggctgcagggaaacagcagcagcagccgccacagcctcctcagccacag
cctgaccccccacctgtgccaccgggccccacctctgtgcccactagcatcctagaacct
gaaccaggtgggagtgaagattgcaatatgtcagaggctgtccagcctgtggagcagggg
ttcctgcagcagctggaggagggtcccagcagttctggacagcatcagccaccacagcag
gaggaagaggaatcaaagccagaaccagagaggtctggcctcagctggagtaaccgagag
aaggcaaaacaggccttcaaggagctactgagggacaaggctgtcccctccaacgcctcg
tgggaacaggccatgaagatggtggtcaccgacccccgttacagtgccttacccaaactg
agtgagaaaaagcaggcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaa
gaggcccggctaaaggccaaggaggccaagcagaccttgcagcatttcctggagcagcat
gaacgcatgacctccaccacccgctaccggcgggcagaacagacctttggggagttggag
gtctgggctgtggtccctgagagggatcgaaaagaagtttatgatgatgtcctcttcttt
ctggccaagaaggagaaggaacaggccaagcagctccggcgtcgcaatatccaagccctg
aagagcatcctggatgggatgagtagcgtcaacttccaaaccacatggtcccaggcccag
cagtacctcatggataatcccagctttgcacaggaccatcagctgcagaacatggacaag
gaagatgcattgatctgctttgaggagcatatccgggctttggagagagaggaggaagag
gagcgggagcgggcccggcttcgggagcggcgccaacaacgcaagaaccgggaggccttt
cagaccttcctggacgagctgcacgagacagggcagctgcattctatgtccacctggatg
gagctgtacccagcagtcagcactgatgtccgctttgccaacatgctgggccagccgggc
tccacccctctggacttgttcaagttctatgtggaggagttgaaggcacgattccatgat
gagaagaagatcattaaggacatccttaaggaccggggcttctgcgtggaggtgaacaca
gcctttgaggacttcgcccatgtcataagctttgacaagagggctgctgcgctggacgca
ggcaacatcaagctgaccttcaatagtctgctggagaaagcagaggcacgagagagagag
cgggagaaggaggaggcacgaaggatgcggcgcagggaagctgcctttcgaagcatgctg
aggcaggctgtgcctgctgtggagctgggcactgcctgggaagaggtccgtgagcgcttt
gtgtgcgactcagcctttgagcagataaccctggagtcggagcggatccggctcttccgg
gagttcctgcaggtactggagactgagtgccagcacctccacaccaaaggccgaaaacac
agcaggaagggcaagaagcaccatcgcaagcgttcccactcgccctcagagggagatttc
tttggccccagatcctcctctcagtctccagttcccaggctgaaaggctccagaggccag
agcgcctcagcactgacatgtatctgctggtctgcccagggctctgagtcagaagaggag
gaactgcccccaccgtctctccggccccccaaacggaggaggcggaacccctcagagtca
ggctctgagccttcttcctcacttgattcagttgaaagtgggggtgctgcccttggagga
cggggctccccatcctcccgccttttccttggatcagatcatggccttcggaaagccaag
aaaccaaaaaagaaaactaagaagagaagacacaagtcgaacagtcctgagagcgagaca
gaccccgaggagaaagctggcaaggagagtgacgagaaagaaccagaacaggacaaggac
agggagctccggcgggcagagctccctaaccgctccccagcttttggaatcaagaaggag
aagacgggctgggacacgtcggaaagtgagctgagcgagggtgagctggaaaggcggcgg
cggacgctcctgcagcagctggacgaccaccaatga
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