Methanopyrus kandleri: MK0060
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Entry
MK0060 CDS
T00078
Name
(GenBank) Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
mka
Methanopyrus kandleri
Pathway
mka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MK0060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mka03019
]
MK0060
Messenger RNA biogenesis [BR:
mka03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MK0060
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MK0060
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
OB_RRP5_4th
S1_RRP5
zf-FPG_IleRS
HypA
Zn_ribbon_PaaD
Cas12f1-like_TNB
DZR_2
DZR
Zn_ribbon_8
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
AAM01277
UniProt:
Q8TZ79
LinkDB
All DBs
Position
complement(57457..58047)
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AA seq
196 aa
AA seq
DB search
MRRYVEPGKFVLPGDKITVAEAFYPGPGTYEDGGVVRAAITGRVEVDLEEREVRVEPYVD
TPPKLKRGASVIGRVQSVKEQVVLVKICFVDDRTDREPPTSGVGGIHISKVRDAYVEDLA
DEFQPGDIVRARVVSTKMPVQLSTVGKEYGVVLAYCTRCRSELEKVKGRTLRCPVCGHTE
TRKVAAGYLREAESDA
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
gtgagacgctacgtggagcccgggaagttcgtactgcccggcgacaagataaccgtggcg
gaggcgttctaccctggcccaggtacctacgaggatggtggtgtcgttcgggccgccatc
accgggcgagtggaagtggatctcgaggagcgtgaggttcgcgtcgaaccgtacgtggac
acaccaccgaaattgaaacggggagcctcggtgatcggacgagtacagtcggtgaaagag
caggtcgttctcgtcaagatatgcttcgtggacgatcggacggaccgtgagcccccaacc
tccggagtgggagggatccatatctcaaaggtcagagacgcctacgtggaggatctggcc
gacgagtttcagcccggagacatcgttcgcgctcgagtcgtgagcaccaagatgccggta
cagctgtccactgtgggtaaagaatacggggtggtcctcgcgtactgcacccgatgtaga
tccgagctcgaaaaggtgaagggtcggactctccgttgccccgtgtgcggtcacaccgag
acaagaaaagttgcggccggctacttgcgggaggccgagagcgatgcctaa
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