Methanopyrus kandleri: MK0380
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Entry
MK0380 CDS
T00078
Name
(GenBank) Predicted exosome subunit, predicted exoribonuclease related to RNase PH
KO
K12589
exosome complex component RRP42
Organism
mka
Methanopyrus kandleri
Pathway
mka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MK0380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mka03019
]
MK0380
Messenger RNA biogenesis [BR:
mka03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MK0380
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MK0380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF3297
Motif
Other DBs
NCBI-ProteinID:
AAM01595
UniProt:
Q8TYC2
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All DBs
Position
complement(365802..366605)
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AA seq
267 aa
AA seq
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MDLDLLARIKRHEVLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVV
GVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMID
LEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEE
DTEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDF
PEHLLEDAIDLATKKAEEVRRTVKAQL
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
gtggacctggacctgctagcccgtattaaacgtcatgaggtactcgccgctatcagggcc
ggagagaggatcgacgggcgtgatttcgaagagtttcgtcccatcgaggtacgtgccggg
gtcatctccaaagcgaacgggtcggccttggtccgtctcgggaacacccagctggtcgtc
ggtgtgaagctggaggtgggtcgcccttaccccgattcacctaacgaaggagccctggcg
gtcaacgcggaactcgttccgctcgccgacccatccttcgaacctggtcctccggatgaa
aacgcgatcgagctctctcgtgtcgtagacagggggatccgcgagtccgagatgatagat
cttgaggagctctgcatagaggaaggtgagcactgctgggtcaccttcgtagacatccac
gtactggaccacgacgggaacttgttcgacgcctccatgatcggctcggtttccgcactc
tccatcaccgaggtgccaaaagccgaagtcgtggacgatgaggttgaagttatggaggaa
gataccgaaccgctcgctatcaacgactttcccatctccgttactatcgctaaagtcggt
gagtacctgctcgtcgacccctgtcttgaggaggaggtcatcatggacaccaggctgaca
gtaaccgtcaccgaaagtggagaagtctgcgcggttcagaagggagagcttggggatttt
cccgagcatctactggaggacgctatcgacctagccacgaagaaggcggaagaagtccga
cgcaccgtcaaggctcaactgtaa
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