Methanopyrus kandleri: MK0382
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Entry
MK0382 CDS
T00078
Symbol
rrp4
Name
(GenBank) Predicted exosome subunit, RNA-binding protein Rrp4 (contain S1 domain and KH domain)
KO
K03679
exosome complex component RRP4
Organism
mka
Methanopyrus kandleri
Pathway
mka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MK0382 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mka03019
]
MK0382 (rrp4)
Messenger RNA biogenesis [BR:
mka03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MK0382 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MK0382 (rrp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
RRP4_S1
KH_1
KH_2
RRP40_S1
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AAM01597
UniProt:
Q8TYC0
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All DBs
Position
complement(367335..368054)
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AA seq
239 aa
AA seq
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MPEFELYVEDRQVVTPGELLARGQVIASEGTYTSGDEVYSKVTGLVDIDGRRIRVIPLAG
PYRPSPGDFVVGIVEEVKFSSWLIDVRAPLPAILHVSNALEEEVDLIETDLSRYYRPGDV
ITAVVREVDPVQRVELSLLEDDAPTRLGRLQGGQVVEIDPVKVPRVIGRKGSMIKMLKRV
LGCDIVVGANGRIYVRAREEPKKERELLAVRAIREIERRSHLRGLTDWLKANLKRLSRW
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagttcgagctgtacgtcgaggaccgtcaggtcgtcactcccggtgagttgttg
gctagagggcaggtgatcgcgagcgaggggacgtacaccagtggggacgaggtatactct
aaagtcaccggactcgtcgacatcgacggccgtaggatcagagtgataccgctggccggc
ccctacaggccctctccgggcgatttcgtcgttgggatcgtggaggaggtgaagttctca
agctggctcatcgacgttcgtgcgcctcttccggcgatacttcacgtgtcgaacgctctt
gaggaagaagtcgatctcattgaaaccgacctttccaggtactaccggccgggagatgtt
ataacggcggtcgttcgagaggtggatccggtacaacgcgtggaactgtctctgctcgaa
gacgatgctccgacgaggctcggccgacttcagggtggtcaggtcgtagagatagacccc
gtgaaggtccccagggtgatcggacgtaaaggttccatgatcaagatgctcaagcgcgtt
ctcggctgtgacatcgtcgtgggcgccaatggacggatatacgtgcgtgctcgggaggaa
ccgaagaaagaacgagagctcctcgccgtacgagctatccgcgagatcgagcgtcgatcg
catctccgtggtcttaccgactggttgaaagcgaatctaaaacgactctcacggtggtga
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