Methanopyrus kandleri: MK0684
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Entry
MK0684 CDS
T00078
Symbol
rpoC_1
Name
(GenBank) DNA-directed RNA polymerase largest subunit, the N-terminal part
KO
K03042
DNA-directed RNA polymerase subunit A" [EC:
2.7.7.6
]
Organism
mka
Methanopyrus kandleri
Pathway
mka03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MK0684 (rpoC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mka03021
]
MK0684 (rpoC_1)
Enzymes [BR:
mka01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MK0684 (rpoC_1)
Transcription machinery [BR:
mka03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
MK0684 (rpoC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
DUF6384
RCF1-5-like_lid
ABM
Motif
Other DBs
NCBI-ProteinID:
AAM01899
UniProt:
Q8TXI9
LinkDB
All DBs
Position
complement(642269..643558)
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AA seq
429 aa
AA seq
DB search
MNVEELLEEVCKEEDVELPDSVHREIVEKVSEDEELKDADEETVRKVLRALVRNYKCRQI
ERGDAVGVLAAQSMCEPATQMTMRTFHLAGVAEIDITTGMPALERVLSLPYHGPPTWVIE
LRLKEPYRSDREKAEGVARKIEETRFEELTEYIEVNPDECAIEIGLDEERIEEHGIDEDQ
LVAFVREHTGGACHLEGDVLKVTLADVESASELAEIANDLREAVVKGIEGVLHASVQYDE
DEEEYYILVRGSPEGAPGRPPRWISQRARNSKVAKRAYLMLQLMQLDEVDATRVNTNDPK
IVDVLLGVEAGRNAIIEQLEEVYESQGISVDPRHFMLISDMMSFWGELRSVRSVGGYSVM
ELKGSPLTKAAFEYVSRVLTETATSGDVEELRGVLENIIVGKPVPVGTGTVELTVDYSKF
KEGEEEGES
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtggaggagctgctcgaagaggtctgtaaggaggaggacgtggagctcccggac
tcggtacaccgagagatcgtcgagaaggtgtcggaggacgaggagctcaaggacgccgac
gaagaaaccgtgcggaaggtcctccgggcgctcgtacgcaactacaagtgccgacagatc
gagcggggcgacgcggtgggcgttctggcggctcagtcgatgtgtgagccggcgacgcag
atgaccatgcgtacgttccacctggccggtgtggcggagatcgacatcaccaccggtatg
ccggcgctggagcgtgtcctttctctcccctatcacggtcccccgacgtgggtcatcgaa
ctgagactcaaggaaccgtaccgcagcgatcgggagaaggccgagggagtggcgcgaaag
atcgaggagacgcggttcgaggaactcacggagtacatcgaggtgaacccggacgagtgc
gccatcgagatcggcctggatgaggagcggatagaggaacacgggatcgacgaagaccag
ctcgtggccttcgtccgggagcacaccggcggggcgtgtcacctcgagggagatgtcctc
aaggtgacgctcgcggacgtggagtcggcatcggagctggccgagatcgcgaacgacctc
cgcgaggccgtagtgaaggggatcgagggggtactccacgcctccgtccagtacgatgag
gacgaggaggaatactacatccttgtcagaggtagtcctgagggagccccgggacggcct
cctaggtggatctcccagcgcgccaggaacagcaaggtggcgaagcgcgcctacctgatg
ctgcagctgatgcagttggacgaggtcgacgctacgcgggtgaacacgaacgacccgaag
atagtggacgtgctcctcggggtggaggccgggcggaacgcgatcatcgagcagctcgag
gaggtgtacgagagccaggggatctccgtagacccgcgccacttcatgctcatcagcgac
atgatgtcgttctggggcgagctgcgtagcgtacggtccgtcggcggttactcggtgatg
gagctgaagggcagcccgctcacgaaggccgccttcgagtacgtatcgagggtcctcacc
gaaacggcgacgtcgggtgacgtcgaggagctgcgtggagtgctcgagaacatcatcgtg
ggtaagccggtaccggtgggtaccggtacggtggagctcacagtggattactccaagttc
aaggagggagaagaggaaggggagagctga
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