Methanopyrus kandleri: MK1682
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Entry
MK1682 CDS
T00078
Symbol
rtcB
Name
(GenBank) Uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mka
Methanopyrus kandleri
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mka03016
]
MK1682 (rtcB)
Enzymes [BR:
mka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MK1682 (rtcB)
Transfer RNA biogenesis [BR:
mka03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MK1682 (rtcB)
Prokaryotic type
tRNA splicing ligases
MK1682 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
LAGLIDADG_WhiA
Hom_end
Motif
Other DBs
NCBI-ProteinID:
AAM02895
UniProt:
Q8TUS2
LinkDB
All DBs
Position
complement(1683574..1686540)
Genome browser
AA seq
988 aa
AA seq
DB search
MAPKSMLKHIRNNVVWELPEDYKGCMKVPGRIYATEKLIDGMEKGVFDQVANVACLPGIY
GYSIALPDAHYGYGFPIGGVAAFDVEEGVVSPGGVGYDINCLAPGTKILTEHGCWVKVED
LPKMLTDQKLKVYDVDEGREDDSEIKFVMERGIEEDERAVVLVTESGLTIEGSEDHPVLT
PEGYVELGEIEEGDLVVVYPFEGVEYEEKEGTILDESDFEDVDPQVLRYLEERDLIPLRW
SDPKVGTLARILGFAMGDGHLGEQAGRLTLSFYGDERTLRELKRDLESLGVKANLHVRKR
RYEIETASGRYEGEATSVELRVASRSFALLMEKLGMPRGRKVETPYKVPDWIKEAPLWVK
RNFLAGLFAADGSVVKFKRYTPLPINLTQAKVEELEENLREFMNDVAKLLREFGIETTLY
EVKSKKNVVYKLAIVGEENIKRFLGKVGYEYDPEKKVEGLAAYAYLKLKERVKKDRKEAA
ETAAEVYEETGSITKAHEAVADVVNRRFVERVVYDGGISSVRVPEDFPTFERFKEERVLA
GGFVIEEVVEVKGVEPEYDRFYDIGVCHGAHNFIADGVVVHNCGVRVMKTDLTEDDVRPK
LRELLETIFRNVPAGLGSRHRRVRLSTQELRQVMLYGAEWAVEEGFGFDEDLDHIESRGN
MTHAYETIGWEEYGPRDDVASKRAIERGRPQLGTLGSGNHFLEVQVVDEIYDKEAAEKMG
IREEGQVTIMVHTGSRGFGHQVCSDHLRIMERSMRDVERRFGVRIPDRQLACAAMGTDEA
KRYFNAMNAAANYAFANRQMISHWTRESFVEVFGDEYGDADDMGIEVIYDIAHNMAKIEK
HPVDGEERWLVVHRKGATRAFSEEALKKHGEPVPFEGLPQPVLIPGDMGTGSYILIGTEK
AMEETWGSTCHGAGRTMSRAAAKRKFWGEDVARELERQGILVKAASMPVVAEEAPPAYKD
VDEVVRAVAEAGISDPVVRLRPIGVVKG
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
gtggccccgaagtcgatgctgaagcacatccgcaacaacgtcgtgtgggaactacctgag
gactataagggatgtatgaaggttccgggtcgcatctacgcaacggagaagctcatcgac
ggaatggagaagggtgtattcgaccaggttgcaaacgtggcttgcttacctggcatttac
ggatactcaatagcgcttccagatgcccactacggatacgggttcccgataggtggagtt
gcagcattcgacgtcgaagagggagttgtaagccctggaggtgtgggttacgatattaac
tgcttagcaccgggtacgaagatcctcaccgagcacggttgttgggtgaaagttgaggac
ctcccgaagatgttgacagaccagaagctgaaggtgtacgacgtagatgaggggcgtgag
gacgactcggagattaagttcgtgatggaacgtggaatcgaagaggacgagagggcagta
gtgctcgtcacggagagcggcctgaccatcgagggtagcgaggaccacccggtcctgacg
cctgaggggtacgtcgagctgggtgagatcgaggaaggagacctggtcgtcgtatacccg
ttcgaaggcgtggaatacgaggagaaggaggggacgatactcgacgaaagcgacttcgag
gatgtagacccgcaagttctgaggtacctcgaggaacgtgacctgattccgctgcgttgg
agcgatcccaaggtgggtacgctcgctaggatcttgggcttcgccatgggcgacggtcat
ctgggcgagcaggccggaaggctcacgctgtctttctacggtgacgagagaacgcttcgg
gagctgaagagagacctggagagcctcggtgtgaaggccaacctccacgtccggaagcgg
aggtacgagatcgaaaccgctagcggacgctacgagggcgaagcgacctcggtcgagctg
agggtagcatcgaggtccttcgcccttctgatggagaagctgggcatgccgaggggtcgg
aaggtcgagacaccgtacaaggtgcccgattggatcaaggaggctcccctgtgggtcaag
aggaacttcctggcgggtctcttcgcggcggacggcagcgtggtcaagttcaagcgctac
acgcccctaccgatcaatctgacccaagcgaaggtggaagagctcgaagagaacctacgt
gagttcatgaacgacgtcgcgaagctcctgagggagttcggaatcgagacgacgttgtac
gaggtgaagtcgaagaagaatgtcgtctacaaactggccatcgtcggtgaggagaacatc
aagcggttcctcgggaaggtcgggtacgagtacgatccggagaagaaggtcgaggggctc
gccgcctacgcgtacctgaaactcaaggagcgggtcaagaaagaccgaaaggaggccgcg
gagaccgccgcagaggtgtacgaagaaacggggagtatcacgaaggcgcacgaagccgtc
gcagatgtcgtcaacaggcgcttcgtcgagagggtggtctacgacggaggaatctcgagc
gtcagggtgcccgaggacttcccgacgttcgagaggttcaaggaggaaagggtactcgct
ggcgggttcgtaatcgaggaggtggtggaggtaaagggggtcgagccggagtacgacagg
ttctacgacatcggcgtctgccacggggctcacaacttcatcgccgatggtgtcgtggtg
cacaactgcggtgtaagagtgatgaaaactgacttaaccgaagacgatgtgcggcctaag
ctgagggagctcttagagaccatcttccgcaacgtacctgccggcttgggatcgcggcat
cgtcgcgtccgtctgtcgacgcaggagctccgacaggtcatgctgtacggtgccgagtgg
gccgtggaagagggattcgggttcgatgaggatctcgaccacatcgaatcccgcggtaac
atgacgcacgcttacgagaccatcggttgggaggagtacggacctagggacgacgtcgcc
agcaagcgtgctatcgagcgtggtcgaccgcagctgggtacgttgggttcgggtaaccac
ttcctcgaggtgcaggtcgtcgacgagatttacgacaaggaagcggccgagaagatggga
atccgtgaggagggacaggtcaccatcatggttcacacgggttcccgaggattcggtcat
caggtctgctccgaccacctcaggatcatggagcggtccatgcgtgacgtagagcggagg
ttcggcgtgaggatcccggaccgccagctagcgtgcgccgcgatgggtaccgacgaggcc
aagaggtacttcaacgcgatgaacgccgcggccaactacgcgttcgcaaaccgtcagatg
atctcgcactggaccagagagtcgttcgtagaggtattcggagacgagtacggcgacgcc
gatgacatgggtatcgaggtgatttacgatatcgcccacaacatggccaagatagagaag
cacccggtcgacggcgaggagcggtggctggtggtacacaggaagggcgccacccgagcc
ttctcggaggaggccctgaagaagcacggagaacccgtaccgttcgagggactgccgcag
ccggtactcatcccgggagacatggggacgggctcgtacatcctgatcggcacggagaag
gcgatggaagagacctggggcagcacctgccacggagcgggacgtaccatgagcagggcc
gcggcgaagcggaagttctggggcgaggatgtggccagggagctcgagcgccaggggatc
ctggtgaaggccgcgagtatgccggtggtcgcggaggaggctcctccggcgtataaggac
gtcgatgaggtggtgcgggcagtcgctgaggctggaatctcggaccccgtcgtgagactc
aggccgatcggtgtggtcaagggctag
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