Methylacidiphilum kamchatkense: kam1_875
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Entry
kam1_875 CDS
T06102
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mkc
Methylacidiphilum kamchatkense
Pathway
mkc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mkc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
kam1_875 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mkc03021
]
kam1_875 (rpoC)
03400 DNA repair and recombination proteins [BR:
mkc03400
]
kam1_875 (rpoC)
Enzymes [BR:
mkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
kam1_875 (rpoC)
Transcription machinery [BR:
mkc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
kam1_875 (rpoC)
DNA repair and recombination proteins [BR:
mkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
kam1_875 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QDQ42115
UniProt:
A0A0C1RJD5
LinkDB
All DBs
Position
858004..862176
Genome browser
AA seq
1390 aa
AA seq
DB search
MEANNLTARQVLGFQKTIGFDEVRISIASPETIESWSKGEVRNPETINYRTFKPEKGGLF
CERIFGPTKDWECACGKYKRIKYKGVICDRCGVEVTLSRVRRERMGHIRLAVPVSHIWFL
KCMPSRLGLMMDMTAKDLERVIYYEDYLVVDPGKTPLKFKQLLSEQEYRDALAQYGEGSF
VAKMGAEAVRDVLKQINLESLASDLARAIEGTRSKQLKKKLSKRLKLVQGLISSETRPEW
MILEVLPVIPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLRTLLQLKTPDVIIRNEK
RMLQEAVDALLDNGRHGRAVTGAGNRPLKSLSDMLQGKTGRFRMNLLGKRVDYSGRSVIV
IGPELKLHQCGLPKKMALVLFEPFMIRRLRELGHVHTVRTAKKMIEKQDPLVWDVLEQVT
AGHLVLLNRAPTLHRLSIQAFEPILIEGDAIRIHPLVCTAYNADFDGDQMAVHVPLSIEA
QLEARLLMLAPLNIFSPSSGKPITTPSQDITLGCYYITQAPLKIKAQEQKRKPLFSDPLE
VIFAYNDGNLQVHDLIFLKNPDYGKETIFGDKNKKVIETTPGRVIFNQIWPEELGFYNKP
AGKKQLGEIILKCYQKVGREKTVQCLDKLKQLGFSEATKAGISIGMDDMIVPTEKSRIIA
KAYEMVNVVERQYRSGAITDGERYNKIVDIWTQATEEISSVIYKTLESNLGRPEYNPLYL
MVDSGARGNRQQVRQLAGMRGLMAKPSGEIIERPIISNFREGLSVLEYFISTHGARKGLA
DTALKTADAGYLTRKLHDVAQDVVITAEDCGTNKGIIVKAIYEGDEEIVKLSERIYGRVC
CDEIFDPMTGKKIIQPGELIDERKAKEIEEAGVEKVKIRSVLTCENKWGVCAMCYGLNLA
TNKMAKLGESVGVIAAQSIGEPGTQLTMRTFHIGGTASQVFKQPQIRARNDGIVQYIDLR
TVKTAENHFIVLSKSGYLAVLDPSGRELERHTVIVGSIILIPDGEMVKKGQVFVQWDPYN
VPILTEKGGIVEFRDIIEGVTVKKELDETTKQISTIVIEHKHDLHPQLLILDENTREVIA
FYGIPAGARIEVKPGDKVVAGQRIARTPRKMVQTKDITGGLPRVAELFEARKPKDSAEIA
KIDGIVEDGGIIRGKRRILIRDIQTGIEEEHLIPLSKHLIVYKGDVVKKGQQLTEGPIVP
QEILEVCGIQELQEYLLNEVQEVYRLQGVEINDKHIEIIIKQMLKKVKILDSGDTSFLWE
EQVDRLKFEEENRIVEAKGGKPAVGVPVLLGITKASLDTDSFIAAASFQDTTRVLTDAAT
LGKVDPLKGFKENIIMGNLIPSGTGFRAYRNIRLVELRPAESKEEQKEQKASENGEGSTL
EEKWIPQAGT
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaataatttaacagctcgccaggtgcttggttttcaaaaaacaataggattt
gatgaggtaagaatttccattgcttcccctgaaacgatcgagtcatggagtaagggagaa
gtacgcaacccggaaactattaattatcggacctttaaacccgaaaaaggaggattgttt
tgcgaaaggatttttggtccaacaaaagattgggagtgtgcttgtgggaagtacaaaaga
atcaaatataagggggttatttgtgatagatgtggcgtagaagtgactttatcaagggta
agaagagaacggatgggtcatatccgactggctgtgcctgtttctcatatttggttttta
aaatgcatgcctagtcgactgggtttgatgatggatatgaccgcaaaggatcttgagcgg
gtgatttattatgaagattatcttgtggtagatccagggaaaacgcctttgaagtttaaa
cagcttctttcagaacaggaatatcgagacgcattggcacaatacggagagggttccttt
gtagcgaaaatgggagctgaagctgtaagagacgtgttaaagcaaatcaatttggaatcc
cttgcaagtgatctagccagagcaattgaaggaacgagaagcaaacaacttaaaaagaag
ctttcgaaaaggctgaaactagtgcaaggacttataagctcggaaacgaggcctgaatgg
atgatattggaggtgttgcctgtgatccctccagatttaaggcctttagttcctcttgaa
ggaggaagatttgccacttcagatttgaacgatctttaccgaagggtcataaatcgaaat
aacagattacgaacccttctacagttgaagactcctgatgtgattatcagaaatgaaaaa
cggatgttgcaggaggctgtagatgccctcttggataatggcaggcatggaagggctgta
actggggcggggaatcgaccactaaaatcgttatcggacatgcttcagggaaaaacgggg
cggttccggatgaatctattaggcaaacgggttgactacagcggccgatcagtcatcgtt
atcggcccagagttaaagctccaccagtgcggccttcctaaaaaaatggctcttgttctt
tttgagccttttatgattagaagactgagagagctggggcatgtccatacggtgcgaacg
gccaagaagatgattgaaaaacaggatccactggtatgggacgtgcttgaacaagtaact
gccggacacttagttcttttaaacagggctccgacattgcacaggctttctattcaagct
tttgaaccgatccttatcgaaggagatgcgattcgtatccatcctttggtttgtactgcc
tacaatgcagatttcgatggggatcagatggcagtccatgttccactttccatagaagct
cagttggaggctcgacttttaatgcttgctccattgaacatcttttcgccttccagcggt
aagccgatcactacgccctcccaagatatcacgcttggttgttactacataacgcaagct
cccctgaagatcaaagctcaggaacaaaaaagaaagccgctattttccgatcctttggaa
gtcatctttgcttacaatgatggaaatttgcaggtacatgatctcatttttcttaaaaat
cctgattatggaaaagaaacgatttttggtgataaaaacaaaaaagtaattgagaccact
cctggcagagtcatttttaatcaaatatggcctgaagaactcggcttttacaataaacct
gctggcaaaaagcagcttggagaaataatcctgaagtgctatcaaaaggttggcagggaa
aaaacggttcaatgtcttgataagctcaagcaattaggcttttctgaagccacaaaagct
ggcatttccattggaatggatgatatgattgttcccactgagaaatccaggatcattgca
aaagcttatgagatggtcaatgttgtggagcgacaatacagatcaggggctataactgat
ggagaaagatataataaaattgtagatatctggacacaagctactgaagaaatttctagt
gtcatttacaagactttagagagtaatctaggaagaccggagtacaatcctctttatctt
atggtggattcgggagccagagggaatcggcaacaggtcaggcaacttgctggaatgaga
ggactcatggccaagccctccggggaaattatagaaagacctattatttcaaatttcaga
gaaggactttctgttttggaatattttattagtacccatggggcaaggaaaggacttgct
gacacagctttaaagacggctgatgcgggctatttgacaagaaaattgcatgatgttgcc
caagacgttgtgattactgctgaagattgtgggacgaataagggaattatcgtcaaagcg
atttatgagggggacgaagaaattgtgaaattatccgaaagaatttatggaagggtgtgt
tgtgatgaaatcttcgatccaatgactgggaagaaaatcatccaacctggagaactcatc
gatgaaaggaaagctaaagagatcgaagaggctggagttgaaaaagtaaagattcgttct
gtcttaacctgcgaaaacaagtggggcgtttgtgccatgtgttatgggttgaatctggct
acaaataaaatggcaaagcttggtgaatcagttggagtaattgctgctcaatctattgga
gaaccaggcacacagctgaccatgcgaacctttcatattggagggaccgcctcccaagtc
ttcaaacaacctcagattcgagctcgaaacgatggcatcgtccaatacattgatcttcgg
acagttaaaacagctgaaaaccatttcatagtgttgagtaaaagcggttatcttgctgtt
ctggatccctcaggcagggaattggaaagacatacggttattgttgggtcgattattttg
attccagatggagagatggtgaaaaagggacaggtttttgttcaatgggatccttataat
gttccaattttgacggagaaaggaggcattgttgaatttagggatatcattgaaggggta
actgtgaaaaaggagttggatgaaacgaccaaacagattagcacgattgtcattgagcac
aaacatgatcttcatcctcagttactcatcctggacgaaaacactcgagaagttattgct
ttttatggtattcccgctggagcaagaatcgaagtgaagccaggagataaggtcgtagct
ggacaaagaatagctagaactcctagaaagatggttcaaacaaaggatataactggaggg
ttacctcgagttgcagagctttttgaagcaagaaaacccaaagattccgccgagattgcc
aaaatagatgggattgtggaagatggaggaattatccgtggcaaaagaaggatactgatt
agggacatacaaacggggatagaagaagagcatctgattcccctttctaaacatttgatt
gtttataagggggatgttgttaaaaagggccagcaattaacagaagggccgattgtgccc
caagaaattctcgaagtatgcggtattcaggaattacaggaatacctactcaatgaagtg
caagaagtctatagactacaaggagtcgagatcaatgataagcatattgagattatcatc
aaacaaatgcttaaaaaggtaaaaattcttgattccggagatacctctttcttgtgggaa
gaacaggtcgaccgattaaaatttgaagaagaaaatagaatcgttgaagctaagggaggt
aagcccgctgttggggtgccagtccttcttggaattaccaaagcttccttggatacggac
agcttcatagcggctgccagctttcaggatacaacaagggttttaacggatgcggctacc
ctgggaaaagtagaccctctcaaaggctttaaggaaaacatcattatggggaatttaatc
ccttcgggtactggattcagagcgtataggaatatccggttagtggagctccgacctgct
gaaagcaaagaagaacaaaaggagcagaaggcttctgaaaatggagagggtagtactcta
gaagaaaaatggattcctcaggctgggacataa
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