Marinimicrobium sp. C6131: OOT55_00030
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Entry
OOT55_00030 CDS
T08615
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mke
Marinimicrobium sp. C6131
Pathway
mke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOT55_00030 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mke03019
]
OOT55_00030 (rnr)
03016 Transfer RNA biogenesis [BR:
mke03016
]
OOT55_00030 (rnr)
Enzymes [BR:
mke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OOT55_00030 (rnr)
Messenger RNA biogenesis [BR:
mke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OOT55_00030 (rnr)
Transfer RNA biogenesis [BR:
mke03016
]
Prokaryotic type
tRNA degradation factors
OOT55_00030 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
CSD
Motif
Other DBs
NCBI-ProteinID:
UZJ44483
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Position
5983..8541
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AA seq
852 aa
AA seq
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MSKEKHPKHDPYAEREAQKYDNPVPSREFILQLLEDAPGPVTHPEVCEMLNIRDEDQVEA
VRRRLIAMARDGQLVSNRRGAFARLDKIDVIRGRVQGHKDGYGFVIPAKGGNDLYLHNRQ
MRRVFDGDEVLVRVTGSYRGKDEAAIVEVLSRNTEQLAGRLFREDGVQFVSPENQRITHD
ILIPPGAEGNAKSGQIVVVAITQQPDKKRPATGKVIQVLGDHMAPGMEIELAIQSHGIPN
EWPDEALTEAEALSDSVRERDKHHRVDIRHLPFVTIDGADARDFDDAVLCEKRKGGGWRL
SVAIADVSHYVPCSSALDVEARKRGNSVYFPDYVVPMLPEAISNGLCSLNPKVDRLCMVC
EMNLDAEGTITSYKFFEGVMHSHARLTYDQVWEILQADGDDEHPLRQQFNEVLPQLHSLH
KLYKVLRKARDERGAIDFETVETQIVFNEDRKIDRIVPVQRNDAHKLIEECMLCANVCTA
RFLEKHQITCLYRVHQGPTEEKLANLREFLGELGLGLGGGADPSSADFQALMQQIQGRSD
SHLIQMVMLRTLRQAVYQVDNEGHFGLGFEAYTHFTSPIRRYPDLLVHRAIRSVIRSDRQ
TANVARVEGAKPLSLREIYPYDTGEVVALGEHCSMTERRADEATRDVESWLKCEFLQDHV
GEVFDGVVASVVGFGLFVELKDLYVEGLVHITALPHDYYRFEPAQHRLVGDRTRKVFSLG
DELRVRVVQVDLDSRKIDFEMESVTATRRGKGKTNARPPAADAREPAPKKSGKGRGRGRS
RGGNDERAPSRSSKRGSSGQRHGKQESQKTAHSKKAGTLRQEKAAQPSENRSLLASAAAG
FKKALAKFTKKR
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaagagaaacaccccaagcacgacccctacgctgagcgagaagcacagaaatac
gataaccccgtgcccagccgcgagttcattctgcaactgttggaagacgcgcccggcccg
gtgacccatcccgaggtctgcgagatgctgaacatccgcgacgaagaccaggtggaagcg
gtgcgccgacggctgatcgccatggcacgggatggacaactggtcagcaaccgccgtggc
gccttcgcccggctggataaaattgacgttattcgcggccgcgtccagggccacaaagat
ggctatggctttgtcatccccgccaagggcggcaacgacctctatctgcacaaccggcag
atgcggcgggtgttcgatggcgacgaagtgctggtccgcgtcacgggctcttatcggggc
aaggacgaggcggccattgtcgaagtcctttcccgcaacacagagcagctggccggtcgc
ctttttcgcgaagacggtgtccagtttgtctctccggaaaaccagcgcattacccatgac
atcctgattccgcccggtgccgagggtaatgccaaatccggccagatcgtcgtggtggcc
attacccagcagccggacaagaagcgtccggcgacgggtaaggtcattcaggtgctgggc
gaccatatggcgcccgggatggaaatcgagctggctatccagtctcacggcattcccaat
gaatggccggatgaagccctgaccgaagccgaagcgctctctgactctgtccgtgagaga
gacaagcatcaccgggtggatattcgccatctgccgttcgtcaccattgacggcgccgat
gcccgggactttgacgatgcggtgctgtgtgaaaaacgcaagggcggtggctggcgcctg
tctgttgccattgccgacgtatcccactatgtgccctgcagcagcgcgctggatgtggaa
gcgcgcaaacgcggcaactcggtgtattttccggattatgtcgtgcccatgctccctgag
gccatttccaacggcctgtgctcgctgaatccgaaggtggatcggctgtgtatggtgtgc
gagatgaacctcgacgccgagggtaccatcaccagttacaagtttttcgagggggtcatg
cactcccatgcgaggctgacctacgaccaggtgtgggagattcttcaggccgacggcgat
gacgaacatccgcttcgccagcagttcaatgaagtgctgccgcaactgcacagcctgcac
aagctctataaggtcctgcgcaaggcccgggatgagcgcggtgccatcgactttgaaacc
gtcgaaacccagatcgtctttaacgaagaccgcaaaatcgaccggattgtcccggtccag
cgcaacgatgcgcacaagctgatcgaagagtgcatgctgtgtgccaacgtgtgcacggcg
cgcttcctggagaagcaccagatcacctgcctgtatcgggtgcaccagggaccgaccgaa
gagaagctcgccaatctgcgggagttcctgggcgagcttggtctcggtcttggcggggga
gcagatcccagctccgcggacttccaggccctgatgcagcagattcagggccgctcggac
agccatctgatccagatggtgatgttgcgcacactgcgccaggcggtataccaggtggat
aacgaaggccactttggtctcggctttgaggcctacacccacttcacctcgccgatccgt
cgctatccggatctgctggttcaccgggccatccgttcggttatccgcagtgatcgccag
acggccaatgtcgctcgcgtcgaaggcgctaaaccgctgtccctcagggagatttatccc
tacgacacgggagaggtggtcgcgctcggtgagcattgctcgatgaccgagcggcgcgcc
gatgaggccacccgggatgtggagagttggctcaagtgtgagtttctgcaggatcatgtg
ggtgaggtgttcgacggtgtagtggcgtcggtggtcggttttggtctgtttgtcgagctg
aaagacctgtatgtcgaggggctcgtccatatcacggcgctgccgcatgactactaccga
ttcgaacccgctcagcaccgcctggtgggggatcgcacccgcaaggtgttcagtctgggt
gatgagctgcgggtgcgtgtggtccaggtggacctggacagccgcaagattgattttgaa
atggagtcggtcaccgcgacccggcgaggcaaaggcaaaaccaacgcccgaccgcccgcc
gccgacgcgcgtgaacccgccccgaagaagtcgggtaaagggagagggcgtggccgctcc
cgtgggggcaatgacgaacgtgccccatcccgttcatccaaacgaggttcatccggacaa
cgtcatggtaaacaggaaagtcagaaaactgcgcactcgaagaaagctggaacacttcga
caggagaaagcggctcaaccgtctgagaatcggtctttacttgcgtcggcggcagctggt
ttcaaaaaagcgctggctaagtttacgaagaagagataa
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