Marinimicrobium sp. C6131: OOT55_02240
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Entry
OOT55_02240 CDS
T08615
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mke
Marinimicrobium sp. C6131
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mke03016
]
OOT55_02240 (rnd)
Enzymes [BR:
mke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
OOT55_02240 (rnd)
Transfer RNA biogenesis [BR:
mke03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OOT55_02240 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
UZJ44894
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Position
526448..527614
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AA seq
388 aa
AA seq
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MTTIPTEPIWIDQNAELAELCERWREQGAIAVDTEFMRSETFYPIAGLLQIGDGRGCYLI
DPLAIDNLEPLRVLFLDPRVTKVLHACSEDLEVFQRWLGVVPEPLFDTQIGAAFAGLGFS
LGYANLVQQLLGIEVPKGETRSDWLQRPLSVPQKKYAALDVAHMLVIYGKLLQRLRDQDR
LTWARADSADLVANAKASPDFNDYYRKVGSAWKLRPRELAVLRRLSAWREREARKRDRPR
NRLIKENGLWELARRQPTDLAQLRTLKEVPAHTQKEEGEALMAEIRLALEEPESEWPERL
DPPLGKAEAPLMKALKRYVRELAEAHELPPELLVRKREYEAVVRSGLKGGAFELPERLQG
WRYELLGQGLLEAAEAHRADVTPQKEPS
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccataccgacagagccgatctggattgatcagaacgcggagctggccgagctg
tgcgagcgctggcgtgagcagggcgccatcgcggtcgacaccgagttcatgcgttcggaa
acgttttatccgattgccggcctgctgcagatcggggatggccgcggctgctacctgatt
gatccgctggcgattgataaccttgaaccgctcagggtcctgttcctggatccgagggtg
accaaagtgctgcacgcctgctccgaggatctggaagtgtttcagcgctggctgggggtg
gttccggagccgctgttcgatacccagattggtgccgcctttgccggcctgggcttttcg
ttgggttatgccaatctggtccagcaactgctgggtatcgaggtgcccaagggagagacc
cgatcggattggctgcagcggcccctgtcggttcctcagaaaaagtacgcggcactcgat
gtggcgcacatgctggtgatttacggcaagttactgcagcggctgagagatcaggatcgc
ctcacctgggcgcgtgccgacagcgccgatctggtcgcgaacgccaaagccagcccggat
tttaacgattactaccgcaaggtgggatcggcgtggaagttgcgcccgcgtgaactcgcc
gtgttgcgccggctcagtgcctggcgcgaacgggaggcacggaagcgggatcgaccgcgc
aaccggttgatcaaggaaaatggtctgtgggagttggcccgccgtcagcctacggatctg
gcgcaactgcggaccctgaaagaagtcccggcccatacccagaaagaggaaggggaggcg
ctgatggctgagatccgcctggcgctggaggaaccggaatccgagtggcccgaacgcctc
gacccgcccctgggcaaggccgaggcgcctttgatgaaggcgctcaaacgttatgtccgt
gaactggcggaagcgcacgaattaccgccggaactgttggtgcgcaagcgcgagtatgaa
gcggtcgtccgctccgggctcaaaggcggagctttcgagctgcccgagcggctgcagggg
tggcgctatgagctcttggggcaagggttgcttgaggcggccgaagcacaccgggccgat
gtcacaccgcagaaggagccctcatga
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