Marinimicrobium sp. C6131: OOT55_02275
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Entry
OOT55_02275 CDS
T08615
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mke
Marinimicrobium sp. C6131
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mke03019
]
OOT55_02275 (hrpA)
Enzymes [BR:
mke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OOT55_02275 (hrpA)
Messenger RNA biogenesis [BR:
mke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OOT55_02275 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
AAA_25
nSTAND3
AAA_23
ABC_tran
AAA_30
TsaE
ResIII
SRP54
T2SSE
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
UZJ44901
LinkDB
All DBs
Position
532516..536457
Genome browser
AA seq
1313 aa
AA seq
DB search
MSESETPTLDQLPQRLDLSRVLSRDRFRLSKGWQAIQERLKAGQPVDKDQSKWLQQWQRS
QQRFEQREQHRPQTIVYPDLPISDKRDEIAELIRDNQVVVLAGETGSGKTTQLPKICLEL
GRGVSGMIGHTQPRRVAAHTVAQRIAEELQSPLGELVGYQVRFTDQTSEQSLVKVMTDGI
LLAEIQNDRFLSRYDTLIIDEAHERSLNIDFLLGFLKQLLPKRPDLKVIITSATIDLERF
SRHFDNAPIIEVSGRTYPVDVWYRPPLDSESESDDSYQPILDAIHEIETHERSAGKGARG
GDILVFLSGEREIREAARSIRQAGFQHLEVLPFYARLSMAEQQKVFAPHKGRRVVLATNV
AETSITVPGIRYVIDPGFARLSRYSYRTKVQRLPVEPISQASANQRKGRCGRVAEGICIR
LYSEEDFLARPEFTDAEILRTNLAAVILQMLQLRMGDIHRFPFIDPPDRRLINDGFKLLE
ELQAVNGKGRLTPTGKQLTRLPLDPRLSRMLIAASELDCLRELLIITSALSVQDPRERPA
DKQQAADQSHRRFWHEQSDFLGFVNLWDYFEQLRQDLSQNQMRKQCKKEFLNYVRWREWR
DIHHQLKVSLRELKLKENGEPADYEAVHRALLSGLLGNLGFNVEDREYLGARNRKFMIFP
GSSQFKKTPKWLVAAELLETSRLYAHTVGKIDPQWALSAARHLVKRHYFEPHYDSKSGRV
KVFEKVSLYGLVLVEKQRVDFTELEPTTCREVFIRSALVEGRYAKKPERGGPAKFFAHNQ
RLVSELDELEAKSRRRDILADDEALYQFYDERIPESVVSRASFDQWRKTAEKDQPRLLFI
EREQLMQRDAGEVTEAQFPDALTWRGVSFPLKYQFEPGHEDDGVNLQVPVSLLHQVPEKR
LEWLVPGLLRDKCISLIKGLPKQWRKHFVPVPDVVDRALAGMQPDNTSLTDALAHQLKRQ
TLVEVPTEAWDDTRIDDFYRVNIQVLDERGRCIARGRDLAVLRERYREQAQEKIQSAAVG
IERDQLTQWDWDTLPGEVQLKRGGIQLRAYPALVDKRDSVAIVVLDEAADAAYQTQRGLA
RLILLELSQTRKYLHKELLKKDELALSVAEMGKRDAVVDDLLLAAVAQWLPLDDLPRTAP
AYERCKQVVREGLVIQAQALADVLSTSLHSLVKIKKQLKQHRTQLPLAFTLSDIRTQLAH
LFYPGMLYRTPEEWLRQYPRYMQALEIRLEKAPLDPNKDRRLVDELAPFWERLEPFWTDR
DGQALALNEALQGYRWSLEEFRVSLFAQTLKTRMPVSAKRLEKQWQALEAERT
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatccgaaacaccgaccctcgaccaattaccccaacgcctcgacctcagccgc
gtactgagtcgggaccggtttcgtctgtccaaaggctggcaggccatccaggagcggctc
aaagccggccaaccggtggacaaagaccagagcaaatggctgcaacaatggcagcgctcc
cagcagcggtttgaacagcgcgaacaacaccggccacagaccatcgtctaccccgacctg
ccgatcagcgacaagcgggacgaaatcgccgaactgattcgcgataatcaggtggtggta
ctggccggggaaaccggctcggggaaaaccacccaactgcccaaaatctgtctcgaactg
ggccggggtgtcagtggcatgattggccatacccagccccggcgggtggcggcgcatacc
gtcgcgcagcgcattgccgaagaactccagtcgcccctgggcgaactggtgggctaccag
gttcggtttaccgaccagaccagcgaacagagcctggtcaaagtcatgaccgacggcatc
ctgctggcggaaattcagaatgatcgctttctgtcccgctacgacaccctgattatcgac
gaagcccacgagcgcagtctcaatattgacttcctgctcggattccttaaacaactgctg
cccaaacgcccggacctgaaggtcatcattacctccgccaccatcgacctcgaacgcttt
tcccggcactttgacaatgcgccgatcattgaggtgtccggccgtacctatccggtggat
gtctggtaccggccaccgctggacagcgagagtgagagtgacgacagctatcagccgata
ctcgatgcgatccacgaaattgaaactcacgagcgaagcgccggtaaaggcgcgcgcggc
ggtgacatactggtgtttctcagcggcgaacgggagattcgggaagcggcgcgcagcatc
cggcaggcggggtttcaacacctggaagtgctgcctttttacgcccgcctgagtatggcc
gagcagcagaaagtgtttgcgccgcacaaagggcgacgggtggtgctcgccaccaatgtg
gcagagacctccatcaccgtgcccggcatccgctatgtgatcgatccgggctttgcccgg
ctcagtcgatacagctaccgcaccaaggtgcagcgcctgcccgtcgagccgatttcccag
gccagcgccaatcagcgaaaaggccgctgcgggcgggttgcggaaggtatctgcatccgc
ctgtacagcgaggaagacttcctggcacgaccggagtttaccgatgcggaaattctgcgc
accaatctcgcggcggtgatcctgcagatgctgcaattgcgcatgggcgatatacaccgg
tttcccttcattgatccaccggaccggcgtctgatcaatgacgggttcaaattgttggag
gagttgcaggcggtcaacggcaaagggcgtctgaccccgacgggaaagcagctcactcga
ctgccactggacccacgactgtccagaatgttgatagcggccagtgaactggattgcctc
agggagctgctgatcatcaccagcgccctgtcggtgcaggatcccagggagcgaccggcg
gataagcagcaggcggcggaccagtcccatcgtcgattctggcacgagcaatcggatttc
ctcggttttgtgaatctgtgggactactttgaacagctgcgtcaggacctgtcccagaac
cagatgcgcaagcagtgcaagaaagagtttctgaactacgttcgctggcgcgagtggcgg
gatattcaccaccaactgaaagtcagcctgcgcgagctcaaactcaaggagaatggcgag
ccggcggattacgaagcggtgcaccgagcgctgctgtccggcttgctggggaacctgggg
ttcaatgtggaagatcgcgagtacctgggagcgcgcaatcgcaagttcatgattttcccg
ggctcgtcccagttcaagaagaccccgaagtggctggtggcggcggagctgttggaaacc
tcccgactttacgcccacacggtgggcaagattgacccccagtgggcgttgagtgcggcc
agacacctggtcaagcgtcattacttcgagcctcactacgactctaaaagtgggcgcgtg
aaagtcttcgagaaggtatcgctgtacgggctggtactggtggaaaagcagcgcgtcgat
ttcaccgaactcgagccgaccacctgtcgcgaagtgtttattcgctccgcgttggtggag
ggccgttacgcgaagaaaccggaacggggcgggcccgcaaagttctttgctcacaaccag
cgtctggtctccgagctggatgagttggaggcgaaaagccggcgccgggatattctggcc
gatgatgaggccctgtatcagttttacgatgagcggattcccgagtcggtggtcagccgc
gccagttttgatcagtggcgtaaaacggccgaaaaagaccagccccggttgctgtttatc
gagcgcgagcaactgatgcagcgcgatgccggggaggtgaccgaggcgcagttccccgac
gcattgacctggcgcggcgtcagttttccgctgaaatatcagtttgaacccggtcacgag
gacgacggggtgaacctgcaggtgccggtcagcctgctgcatcaggtaccggaaaaacgc
ctcgagtggttggtgcccggactgttgcgcgacaagtgcatcagtctgatcaaggggttg
cccaagcagtggcgcaagcactttgtgccggtgccggatgtggtggaccgggccttggcc
ggcatgcagccggacaacacctcgttgaccgatgccctggctcaccaactcaagcgtcag
accctggtcgaggtgccgaccgaggcctgggacgacacccgcattgacgatttttaccgg
gtcaatatccaggtgctggacgagcgggggcgctgtatcgcccggggtcgggatctggcg
gtgttgcgcgagcgctatcgggagcaggcccaggagaagattcaatcggcagcggtgggc
atcgagcgcgaccagctgacccagtgggactgggatacattgccgggggaggtgcagctc
aagcgcggcggtatccagttacgcgcttacccggcgctggtggacaagcgcgattcggtg
gccatcgtggtgttggatgaagcggcggatgccgcctatcagacccagcgcgggctggcg
cggctgattctgttggagctttcccagacccgaaagtatttgcacaaggagctactgaaa
aaagacgagctggctctgtcggtggcggagatgggtaagcgcgatgcggtggttgatgac
ctgctgctggcggcggtggcccagtggttaccgctggatgacctgcctcgaaccgcaccg
gcctatgagcgctgcaagcaagtggtgcgcgaagggctggtgatacaggcccaggccctg
gcggatgtgctttccaccagtctgcactccctggtgaagatcaaaaaacagctcaagcag
caccgcacccaactgccactggcgtttaccctgtcggacatccgcacccagctggcccac
ctgttttacccgggcatgctgtatcgcaccccggaggaatggctgcgccagtacccacgg
tatatgcaggcgctggaaattcggctggaaaaggcgcctctggacccgaacaaggatcgc
cgcctggtggatgagctggcacccttctgggagcgtctggagcctttctggaccgatcgc
gacggtcaggccctggcgttgaacgaggcgcttcaggggtaccggtggagcctggaggaa
ttccgggtgtcgctctttgcccagacactgaaaacgcgcatgccggtatccgccaaacgt
ctggagaagcagtggcaggcgctggaagcggagcgtacctga
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