Marinimicrobium sp. C6131: OOT55_05500
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Entry
OOT55_05500 CDS
T08615
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mke
Marinimicrobium sp. C6131
Pathway
mke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOT55_05500 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mke03019
]
OOT55_05500 (rne)
03009 Ribosome biogenesis [BR:
mke03009
]
OOT55_05500 (rne)
Enzymes [BR:
mke01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OOT55_05500 (rne)
Messenger RNA biogenesis [BR:
mke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OOT55_05500 (rne)
Ribosome biogenesis [BR:
mke03009
]
Prokaryotic type
rRNA processing factors
OOT55_05500 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UZJ45509
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All DBs
Position
1302576..1305773
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AA seq
1065 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRNREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFSKAPNDVEGRIKIKEVVKEGTEVIVQVDKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGISRRIEGEDRAQLKDALSGVEIPSGMGIIIRTAGVGRSSEE
LQWDLNYLLQLWESIDKAAKSAPAPNFLFQESNVIIRAIRDYLRQDIGEVIVDNKEAFDL
ANGFIQQVMPNFGSKVKLYNDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMQPARNQREVE
NRMRDALNMDRARVQVGRISRFGLLEMSRQRLRPSLGEVHSKVCPRCNGQGTIRSTRSLA
LSILRLVEEEAQKERSAEIRAIAPVSVATYLLNEKRKTISNIEQRNSTRVVVVPNADMMT
PHFEVQRLRDDDEGTLETSYKIVATADEHSEEEVETSSKPAPVPQPAVQPATPTQAAPTP
VAPKQPGLWERFVALLVKLFKGDEDDQKSSSSKGKGHQRSRHSRGGNQNRRREGAGRNRR
GGRRDERGSQRDTDSRPDKRQEKAAEKSPDSSQDKGQDKNVEGSSGRRSRGGRNRRGGAG
NKPDNRGDNSQPKDATPQKTETAEVESQAQDQGTDDQQDNRPPKRPAGRRTRSGPRRRNR
RELPEEVIEKANEIQAANQDTTDSVKAERSNRASRDQARSPEARSDKPAEDKMSKANAPT
RRTDTESAAAPVEAAEADHTSVSRAAETTAPQAAAPADSAPAVQAPDEDNVIKPTATAEL
REDVPRRVSQRQVGEPRPPVDKPDATKGDATSGNAKPGAEAPQERSEAKTGSPDVDAAKL
EAAAETTPETDQPPTPGPKSATGDEPVNTGSPEESAPDRAPAVTAEPEQNVEVDATEAPE
QTIAPAATAEPAKAPHSSPVEKQEVTESTPTSSTRPSTRAANDPRLAPQPKVPTEIVTEH
RQRSSAQALDTRQPPAVSHNPRPLARPANDPRNRQAPEVEPSASE
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaatgcaactcagcccgaagagttgcgcgtggctctggtcgac
ggccaatggctgtacgatctggacatcgagaatcgcaatcgagagcaaaagaaagccaat
atctacaaaggtaaaatcacccgggttgaacccagcctggaagctgcctttgttgattac
ggtgccgagcgccacggctttctccccctgaaagaaatctcccgcgagtacttcagcaaa
gcccccaacgacgtcgagggacgcatcaagatcaaggaagtggtcaaagaaggcacggaa
gtcatcgtgcaggtcgacaaggaggagcgcggcaataaaggcgccgcactcaccacgttt
gtcagcctggcgggtcgctatctggttctgatgcccaataacccgcgcgcgggcggaatc
tcccgccgcatcgaaggggaagaccgggcgcaactcaaagacgcgctgagcggcgttgaa
atcccctccgggatgggaatcatcattcgcaccgccggtgtcggccgcagctcggaagaa
ctccagtgggacctgaattacctgctgcaactctgggagtccatcgacaaagccgccaaa
agcgccccagcgcccaacttcctgttccaggagagcaatgtcatcatccgcgccattcgc
gactacctccgtcaggacatcggcgaagtgatcgtggataacaaggaagccttcgatctg
gccaacggcttcatccagcaggtgatgcccaacttcggcagcaaggtaaagctgtacaac
gacgacattccgctgttcaaccgttaccagattgaaagccagatcgagaccgcctttcaa
cgcgaagtcaagctgccctccggtggctcgatcgtgattgatgtgaccgaagcgctggta
tccatcgacatcaactcctcgcgcgccaccaagggcggcgatatcgaggaaaccgctctg
cagaccaacctggaagcggccgatgagattgcccgtcagctgcgcttgcgggatatgggc
ggtctgatcgttatcgactttatcgacatgcaaccggcccgcaatcagcgggaagtggaa
aaccgcatgcgcgatgcgctgaacatggaccgggcccgcgttcaggtgggccggatctcc
cgcttcggtctgctcgagatgtcccgccagcgcctgcgcccctctctgggcgaagtgcat
tcgaaagtctgcccccgctgtaacggccagggaaccatccgcagcactcgctctctggct
ctgtcgatcctgcgcctggtggaagaggaagcccagaaagagcgcagcgccgaaatccgc
gccatcgcgccggtgtctgtggcgacctatctgctcaacgaaaagcgcaaaaccatttcc
aacatcgagcaacgcaacagcacccgtgtggtcgtcgtaccgaacgccgacatgatgacc
ccacacttcgaagttcagcgtctgcgcgatgacgacgagggcacgctggaaaccagctac
aaaattgtggccaccgccgacgagcacagcgaagaggaagtggaaaccagcagcaaaccg
gcaccagtgccccagcccgctgtgcaaccggccactcccacccaagcggcaccgacaccg
gtcgcccccaaacaacccggcttatgggagcgctttgtcgccctgctggtcaagctgttc
aaaggcgacgaagacgaccagaagtcgtcctcgtcgaaaggtaaaggccatcagcgcagc
cgccacagccgcggcggcaatcagaaccgccgccgtgaaggtgctggacgcaatcgccgc
ggaggtcgtcgcgatgagcgtggcagccaacgggacactgacagtcgccccgataagcgc
caggaaaaagcggcggaaaagtccccggacagcagccaggacaagggccaggacaaaaac
gtcgagggaagcagcggccgccgctcccgtggcggccgaaaccgtcgcggcggagccggg
aacaagccggacaatcgcggtgacaacagccaaccaaaagacgcaactccgcaaaaaacg
gaaaccgccgaggtcgaatcgcaggcgcaggatcagggaactgatgaccagcaggataac
cggccgcccaagcgcccggcgggacgccgcacccgttccggcccccgtcgtcgcaaccgc
cgtgaactgcccgaagaggtgattgaaaaagccaacgagatccaggctgccaatcaggac
acgaccgacagcgtaaaagccgagcggagcaaccgggcaagccgtgatcaggcgcgcagc
cccgaagcccggagtgataaaccggccgaagacaaaatgtccaaggcgaatgctccgacc
cgccgtaccgacactgaatcggcagccgcacccgttgaggccgccgaggccgaccacacc
agcgtgtcacgcgccgccgaaaccactgcccctcaagctgcggccccggccgacagcgct
ccggccgtgcaagccccggacgaagacaatgtcataaaaccgaccgccactgcggagctt
cgggaggacgtgccccggcgagtcagccaacgccaggtgggcgagccgcgtccaccggtc
gacaagcccgatgcgaccaagggtgacgccacctccggtaacgcaaagccgggggccgag
gcgcctcaggagcgctccgaggcaaagactggctcccctgacgtcgacgccgcaaagctt
gaggctgcagcggaaaccactcccgaaacggatcaaccgcccactccgggacccaaatcg
gcgacgggcgatgagccggtgaataccggatctccggaagagtctgctcccgatcgggcg
cccgccgtcacggcggagccggaacagaacgttgaagtcgacgcgactgaagccccggag
cagacgattgccccggcggccacggccgaaccggcaaaagcgccgcactcttctcccgtc
gaaaaacaggaggtcactgaatcgacacccacgtccagtacccggccgtcgacccgggct
gccaacgacccacgtctggcaccccaacccaaagtgccaacggagattgtgacggaacac
cgccaacgctccagtgcccaagcgctggatacccggcaaccgccagcggtaagccacaat
ccacgtcctctggcccgtccggcgaatgatcctcgcaatcgacaagctccggaagtggag
ccaagcgccagcgagtaa
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