Marinimicrobium sp. C6131: OOT55_06335
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Entry
OOT55_06335 CDS
T08615
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mke
Marinimicrobium sp. C6131
Pathway
mke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOT55_06335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mke03019
]
OOT55_06335
03009 Ribosome biogenesis [BR:
mke03009
]
OOT55_06335
Enzymes [BR:
mke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OOT55_06335
Messenger RNA biogenesis [BR:
mke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OOT55_06335
Ribosome biogenesis [BR:
mke03009
]
Prokaryotic type
rRNA helicases
OOT55_06335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZJ45667
LinkDB
All DBs
Position
1487713..1489542
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AA seq
609 aa
AA seq
DB search
MTEQTPLLFTDLGLSEPVLQAIQSVGYEQPSPIQAAAIPALLDGKDIVGMAQTGTGKTAA
FALPLLSRFNPEQREPQILVLAPTRELAIQVAEAFQRYASKLNNFHVLPIYGGGDMGGQL
RQLKRGAQVIVGTPGRVMDHLRRGTLDLSKLQSLVLDEADEMLRMGFIDDVEWILEHTPK
ARQTALFSATMPSQIRKVASQYLNSPQEIKIASNTSTGDNIEQVYWMVSGTNKLDALTRI
LEVEPFDGMIIFARTKNATVELAEKLEARGYAASALNGDMNQQLRERTIERLKNGKLDIV
IATDVAARGIDVERVSHVLNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYV
IEKATRQPIKHMELPTGEAVTAHRIDQFKQSIQQVFDTSVDLSFFNDLLADFSHQTDRSP
EEIASALAYLVQKERPLQVKLAEIRPEKPSTKGKNKLAREAKAGKGPKPRVDDSDLQRYR
LDVGRSHEVRPGDIVGAIANEAGIDSQYIGHIKLFDEFSTVDLPKGMPPEVMQLLKKVRV
RNRPLNIAEDTGPRNDGPAPDFKRRGPKPGDKRAPGKFAGKGKPDGKGKPKAKVRDRDVK
NKGYRAKKV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacaaacccccttgctgtttaccgacctgggcctgtctgaacccgtgcttcag
gccatccagtccgtcggctacgaacagccctcgcccattcaggcagccgccatcccggcc
ctgctcgacggcaaagacatcgtgggcatggcccagaccggtaccggcaagaccgccgcc
ttcgccctgcccctgctgtcgcgcttcaaccccgagcagcgcgagccgcagatcctggtg
ctggcgccgacccgcgagctggccattcaggtggccgaagccttccagcgctatgccagc
aaactgaacaactttcacgtactgccgatttacggcggcggcgacatgggcggccagttg
cgtcagctcaagcgaggcgctcaggttatcgtcggtacgccgggtcgcgtgatggaccac
ctgcgtcgcggcaccctggatctgtccaagctgcagagcctggtgctcgacgaagccgat
gaaatgctgcgcatgggctttatcgatgacgtcgagtggattctggagcacacacccaag
gcgcgccagaccgccctgttctcggccaccatgcccagccagatccgcaaggttgccagc
caatacctgaacagcccccaggaaatcaaaattgccagcaacacctccaccggtgacaac
atcgagcaggtgtactggatggtcagcggcaccaacaaactcgacgccctgacccgtatt
ctggaagtcgagccgttcgacggcatgatcatttttgcccgcaccaagaacgcgaccgtc
gagctggcggaaaaactcgaagctcgcggttatgcggcatctgcgttgaatggcgacatg
aaccagcaactgcgtgagcgcaccattgagcggttgaaaaacggcaagctcgatatcgta
atcgccactgacgtggcagcgcgcggtatcgacgtggagcgggtcagccatgtacttaac
tacgacatcccctacgacagtgaagcctacgttcaccgtattggccgcaccggtcgtgcc
ggtcgcagcggtaaggcgattctgtttgtagcaccacgcgagaagcgcctgttgtatgtg
atcgaaaaggcgacccgtcagccgatcaagcacatggaattgccgaccggtgaagccgtg
accgcgcaccggatcgatcagttcaagcaatcaatccaacaggtttttgataccagtgtg
gacctgagttttttcaatgatctactggccgatttcagccatcagaccgaccgctcaccg
gaagagattgcctcggccctcgcctatctggtgcagaaagagcgcccattgcaggtgaag
ctggccgagattcgtccggaaaagcccagcaccaaaggcaaaaacaagctggcgcgcgaa
gccaaggccggcaaaggccctaagccccgcgtcgatgactcggatctgcagcgctatcgg
ttggatgtgggacgcagtcatgaagtgcggccgggcgatattgttggcgccattgccaat
gaggccggtatcgacagtcagtacattggtcacatcaagttgtttgatgagttttcaacg
gtggatctgcccaagggtatgccgccggaagtgatgcagttgctgaagaaagtgcgggtg
cgcaatcggcctctcaatattgccgaggacacgggtccgcgcaacgatggtccggcgccg
gatttcaagcgtcgcggtcccaagccgggcgataagcgtgcgccgggtaagtttgcgggt
aagggcaagccggatggtaaaggtaagccgaaagcgaaagtgcgtgatcgtgatgtgaag
aataaagggtatcgcgcgaagaaagtatag
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