Marinimicrobium sp. C6131: OOT55_06930
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Entry
OOT55_06930 CDS
T08615
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mke
Marinimicrobium sp. C6131
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mke03009
]
OOT55_06930 (rlmD)
Enzymes [BR:
mke01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OOT55_06930 (rlmD)
Ribosome biogenesis [BR:
mke03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OOT55_06930 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
TRAM
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
Methyltransf_23
MTS
RrnaAD
PCMT
Ubie_methyltran
Methyltransf_15
CMAS
Motif
Other DBs
NCBI-ProteinID:
UZJ45777
LinkDB
All DBs
Position
complement(1629362..1630729)
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AA seq
455 aa
AA seq
DB search
MSRRPPRPGRRPGSARKPRFQPRRLPDALTVERLSHDGRGIVRWQGKTLFVAGALPGESV
RVLLEAEQSRYAEGSVAELLTSAPERQSPPCVHFRECGGCQLQHVRPDAQLAFKQQALLD
QLARWGGVTPRQLAPAIESPSEGYRHRARLGVWTDKRGGVTVGFRRRGQRELVDIAHCEV
LAPALNALIEPLKLWLSGLQAPGAISHIELILAGEGPALVLREIRTLKDADRETLATALP
GVPPERIWRQINDQTTLLTLAGEPCDPRLSYALPEFDLTLGFHPQDFTQVNAEVNRRMVQ
QALDWLAPRPGEQVLDLFCGIGNFTLPLARSGARVLGLEGAASMVSRGEENARRNHLEAT
FAQANLADPSPAMRRRWGTPDAVLIDPPRDGAREVLDTLIKLRPGRLVYVSCNPATLARD
AAELASAGYDLQSVGVLDMFPHTEHVESMALFQRR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgccgaccaccgcggcccggccggcgcccggggtcagcccgcaagccccggttt
caacccaggcgcctgcccgatgcgctgactgtggagcgcctgagccacgatggacggggt
attgtccgctggcagggcaagacgctgttcgtcgctggagccctgcccggcgagtctgtg
cgggtgcttctggaggcagagcagagccgatacgcggagggctcagtggccgagttgctc
acctcggcaccggagcggcaaagcccaccctgtgtgcactttcgggagtgtggtggctgc
cagttgcagcacgtccgacccgatgcccaactcgccttcaaacagcaggccctgctggat
cagttggcccggtggggtggtgttaccccacgccagttggcgcccgccatcgaatcgccc
agcgagggctaccgccatcgggcccggctgggggtctggaccgacaagcgcggcggggtc
accgtaggatttcgccgtcggggccagcgcgagctggtggacattgcgcactgcgaggtg
ttggcgccggcgctcaacgctctgattgagccactgaagctctggctgtccggcctgcag
gcaccgggggccatcagccatattgaattgattctggccggtgaagggccggcgttggta
ttgcgggaaatcagaacgctgaaagacgccgatcgggaaacgctggcgacggctttgccg
ggtgttccgcctgagcgaatctggcgccagatcaacgaccagacgacgctgctcactctg
gcgggagagccctgcgatccccgcctgagctatgcgctgcccgagttcgatctgaccctg
gggtttcatccccaggatttcacccaggtgaatgccgaggtcaatcggcgtatggtccag
caggccctggactggcttgccccccggccgggagagcaggttctggacctgttttgtggc
atcggcaactttacgctacccttggcccgctccggtgcccgggtattggggctggagggg
gccgccagcatggtgagccggggcgaggagaacgcccgccgcaatcatctggaggcgacc
ttcgcccaggccaatctggccgaccccagccccgctatgcgccgtcgctggggcacaccg
gacgccgtgttgatcgatccgccgagggatggggcgcgagaggtattggacacattgata
aaactccggcccggccggctggtctatgtctcctgtaacccggccacgctggcgcgcgat
gccgcagaactggcctccgcggggtatgacttgcaatccgtcggcgtgctggatatgttc
ccgcacaccgaacatgtggaatccatggcgctgttccagcgccgctaa
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