Mycobacterium kokjensenii: MU0083_003270
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Entry
MU0083_003270 CDS
T10822
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mkk Mycobacterium kokjensenii
Brite
Enzymes [BR:
mkk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MU0083_003270 (hrpA)
Messenger RNA biogenesis [BR:
mkk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MU0083_003270 (hrpA)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
CAJ1503778
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Position
1:complement(3478756..3482670)
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AA seq
1304 aa
AA seq
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MVEPSVAQLRKLLDELTFRDAARLGGRLKNVRNGQDAKLRDIAEQIAAGQALTAARAAAV
PAVGYPDLPVSARRDEIAAAIKAHQVVVVAGETGSGKTTQLPKICLELGRGIRGTIGHTQ
PRRLAARTVAQRIADELGSPLGDVVGYAVRFTDRVSDRTLIKLMTDGILLAELERDRRLL
RYDTLIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIEPERFAAHFAGTGGAPI
VEVSGRSYPVEIRYRPLEVPVASDAGDDPDDPDHEIIRTETRDEIEAIVDAVQELSAEPP
GDILVFLSGEREIRDTAEALGGLTNTEILPLYARLSTAEQQKVFAPSRAGRRVVLATNVA
ETSLTVPGIRYVIDPGNARISRYSRRLKVQRLPIEPISQASAAQRSGRCGRTAPGVCIRL
YSEADFEARPRYTDPEVLRTNLAAVLLRMASLRLGAMEDFGFLDPPDSRSIRDGVQLLVE
LGAFTPQGAITAVGRRLARLPVDPRLGRMIVAAEAEGCVREVLVLAAALTIPDPRERPLE
REEAARAKHARFADDASDFIAYLNLWSYLSGQRKALSGSAFRRMCRDEFLHYLRIREWQD
LVGQLRSIAGDIGIRDTRGPADDPAKPAAIHAALLAGLLSHVGMRRDDGREFAGARNSKF
VLAPGSVLAKRPPRWTMVAELVETSRLFGRTAARIEPEMVERVAGDLVQRSYSEPHWDAK
RGEVMAFERATLYGLPLVARRRVGYARVEPAVARELFIRHALVEGDWTGKHRFLADNAEL
RTRLQALEDRVRRRDLIVDDDTVYDLYDARIPADVVSARHFDGWWRKQRQATPGLLTFTR
DELLRTDETVGADRPDSWATADMTLPLTYRFEPGAADDGVTVHVPIDVLARLGGDEFAWQ
VPALREELITALIRSLPKDLRRNFVPAPDTARAVLSAIDAARGEPLLGALSAELRRRTGV
AVPLDAFDLSKLPAHLRVTFAVEAADGTEVGRGKDLAVLQERLADPARDAVAETVGAELE
RTGLRAWPDDLETLPTGVQRLVAGREVRGFPAFVDAGDTAELRVFSTAAQQRSALRPGIR
RLLRCEIATPVKAVERQLSSQTRLMLKANPDGSLTDLIDDCADAATDALCPSPVWTRDEY
VALRNRVAAALVATTADVVNRVAQVLAVARDIELALPGQPPAAQAESLADVRGQLDVLLA
PGFVTATGRARLGDLTRYLTAARRRLEQLPRALAADRDRMARVQAVQDAYDDLLATLPTA
RHRDEDVRDIARQIQELRVSLWAQQLGTPRPVSEQRILKALKQL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgaaccgtccgtcgcgcagttgcgcaaactcctcgacgagctgacctttcgcgat
gcggcccgactgggcggacggctgaagaatgtccgcaacgggcaggacgcgaagctgcgc
gacatcgccgagcagatcgcggccggtcaggccctgaccgccgcgcgggccgccgcggtt
ccggccgtcggctaccccgatctgcccgtcagcgcccgccgcgacgagatcgccgcggcg
atcaaggcacaccaggtggtggtggtggccggcgagaccggctcgggaaagaccacccag
ctccccaagatctgtctggagctcggccgcgggatccgcggcaccatcggccacacccag
ccgcggcggctggccgcccgcaccgtcgcccagcgcatcgccgacgaattgggcagcccg
ctcggtgacgtcgtcggctacgcggtccgattcaccgaccgggtctccgatcgcacgctg
atcaagctgatgaccgacggaatcctgttggccgagctcgaacgcgaccgccgcctgctg
cgttacgacaccctgatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctg
ctcggctacctgcgcgagctgctgccgcggcgccccgacctgaaggtgatcatcacctcc
gcgacgatcgaacccgagcggttcgcggcgcacttcgcgggcaccggcggcgccccgatc
gtcgaggtgtccggtcgcagctatccggtggagatccgttaccggcccctggaggtgccg
gtcgcctcggatgccggggacgacccggatgatcccgaccacgagatcatccgcaccgag
acccgcgacgagatcgaggcgatcgtcgacgcggtgcaggaactctccgccgagccgccc
ggcgacatcctggtgttcctctccggcgagcgggagatccgtgataccgcggaggcgctc
ggcgggctgaccaataccgagatcctgccgctgtacgcgcggctgtccaccgccgaacag
cagaaggtcttcgccccgtcccgggccggccgccgggtcgtgctggccaccaatgtggcc
gagacgtcgctgaccgtgccgggtatccgctatgtcatcgaccccggcaatgcccggatc
tcccggtacagccgccggctgaaggtgcagcggctgccgatcgaacccatctcgcaggcc
tccgccgcccagcgcagcggtcggtgcggccgcaccgcaccgggggtatgcatccggctc
tacagcgaggccgacttcgaggcccgcccgcgctacaccgatcccgaggtgctgcgcacc
aatctggccgcggtgttgctgcggatggcatcgcttcggctgggtgcgatggaggatttc
ggtttcctcgacccaccggattcgcgcagcatccgcgacggggtgcagttactggtcgaa
ctcggcgccttcactccgcagggtgcgatcaccgccgtcggacgccggctggcccggctg
ccggtggatccgcgcctgggtcggatgatcgtcgccgccgaggccgaggggtgcgtgcgt
gaggtactggtgctggccgccgccctgaccatccccgatccccgggagcggccgctggag
cgggaggaggccgcccgggccaaacatgcgcgattcgccgacgacgcatcggacttcatc
gcctacctcaacctgtggtcgtatctatcagggcaacgtaaagccttgagcggcagcgcg
tttcgacggatgtgccgggacgagttcctgcactacctgcggatccgggaatggcaggac
ctggtcggacagctgcgcagcatcgccggggatatcggtatccgcgacaccaggggaccg
gccgacgatccggcgaagcccgcggcgatccatgccgccctgttggccggactgttgtcg
cacgtcgggatgcgccgcgacgacggccgcgagttcgccggggcgcggaattcgaaattc
gtgctggcacccggatcggtgctggccaaacggccgccgcgctggacgatggtggccgaa
ctcgtggagaccagtcggctgttcgggcgcacggcggcgcgcatcgaacccgagatggtc
gaacgggtcgccggcgacctggtgcagcgcagctacagcgagccgcactgggacgccaag
cgcggtgaggtgatggccttcgaaagggccacgctctacgggctgccgttggtggcgcgc
cgccgggtcggctacgcccgggtggaaccggcggtggcccgggaactgttcatcaggcac
gccctggtggagggcgactggaccggcaagcaccggttcctggccgacaacgcggagttg
cgcacccggttgcaggcattggaggaccgggtgcggcgccgcgatctgatcgtcgacgac
gacaccgtctacgacctctacgacgcccggataccggccgacgtggtctcggcgcggcac
ttcgacggctggtggcgcaagcagcgccaggccaccccgggcctgctgaccttcacccgc
gacgaactgctgcgcaccgacgaaacggtcggagccgaccggccggacagttgggcgacc
gcggacatgacgctcccgctgacgtaccgcttcgagccgggcgccgccgatgacggggtc
accgtccacgtcccgatcgacgtgttggcccgcctcggcggtgacgaattcgcctggcag
gtgccggcgctgcgcgaagaactgatcaccgcgctgatccggtcactgccgaaggacctg
cggcgcaacttcgtaccggcacccgacaccgcccgcgccgtgctgtcggcgatcgacgcc
gcccgcggcgaacccctgctgggggcgctgtccgcggaactgcgtcgccgcaccggcgtg
gcggtgccgctggacgccttcgacctgtccaaactcccggcacacctgcgggtcacgttc
gccgtcgaggccgccgacggtaccgaggtgggtaggggcaaggacctcgccgtgctgcag
gagcggctggccgatccggcccgcgacgcggtggccgagacggtcggggccgagctggaa
cgcaccggcctgcgggcctggcccgacgacctcgagacgctccccaccggggtgcagcgg
ctggtggcgggccgcgaggtccgcggcttcccggctttcgtcgacgccggggacaccgcg
gagctgcgggtgttctcgaccgcggcccaacagcggtcggcgctgcggcccggcatccgc
agactgctgcgctgcgagatcgccacaccggtcaaagccgtggagcggcagctcagttcg
cagacccggctgatgctcaaggcgaatcccgacggctcgctgaccgacctgatcgacgac
tgcgccgacgccgccaccgacgcgctgtgcccgtcgccggtgtggacccgcgacgagtac
gtcgcactgcggaaccgggtggccgccgcactggtggcgaccaccgccgacgtggtgaac
cgggtggcgcaggtgttggccgtggcccgggatatcgagttggcgctgccggggcagccg
ccggctgcccaggccgagtcgctggccgatgtccgcggccaattggacgtactgctggct
cccgggttcgtcaccgcgaccgggcgtgcccgactgggcgatctgacccgctacctgacc
gccgcccgtcgccggctggagcagttgccgcgcgcgctggcggccgatcgggaccggatg
gctcgggtacaggcggtgcaggacgcctatgacgacctgctggcgacgctgccgacggca
cgtcaccgggacgaggacgtgcgcgacatcgcccgccagatccaggaactacgggtgagt
ctgtgggctcagcagctcggtactccgcgcccggtcagcgagcagcggatcctcaaggca
ctcaagcagctctag
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