Mycobacterium sp. KMS: Mkms_3624
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Entry
Mkms_3624 CDS
T00442
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mkm
Mycobacterium sp. KMS
Pathway
mkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mkms_3624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mkm03019
]
Mkms_3624
03009 Ribosome biogenesis [BR:
mkm03009
]
Mkms_3624
Enzymes [BR:
mkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mkms_3624
Messenger RNA biogenesis [BR:
mkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mkms_3624
Ribosome biogenesis [BR:
mkm03009
]
Prokaryotic type
rRNA processing factors
Mkms_3624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ABL92818
UniProt:
A1UJ10
LinkDB
All DBs
Position
complement(3812288..3815263)
Genome browser
AA seq
991 aa
AA seq
DB search
MADSENTQAQDSPDSSEEASPRERLPERLRVHSLARVLGTTSRRVLDALAELDGRARSAH
STVDKTEAERVREVLAGSDGDAPVEAPAPAEIAESVADAPEVVIETVESVEVTIDVAPVG
DTSDVPEPEDEPESRTILETAPVERADYLPLFVAPQPVRFEPADEDDDEDEDDDVAASAD
SEDDDEDDQSERPAARRRRRGRRGRGRGRGEQSDDNGEPDAAEGTETKTDGQADSDQDTG
DDSDEDGDEDTSGGDGSSRRRRRRRRRKSGASDDSDNGSPDDPPNTVVHERPPRERGGKS
GDSDDNEIQGISGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERVMVVRDKV
RTEPPHEGARYTQIAVLEDGVVVEHFVTSPASASLVGNIYLGIVQNVLPSMEAAFVDIGR
GRNGVLYAGEVNWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGR
YLVYVPGASSTGISRKLPDTERQRLKEILREVVPADAGVIIRTASEGVKEDDIRSDVNRL
QERWTQIEAKAAEITAKKAGAAVALYEEPDVLVKVIRDLFNEDFSGLIVSGDEAWNTINS
YVESVAPDLMPRLTKYEPAGNPNGEGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRT
EAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN
RDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIVLH
GDPIDNASGNGRKSEPGTGRRSKRGKKGGKPEEAPAAVPVIKVPPHPAGEHPMFKAMAAA
NGRDDESEDESDESADEQSGAREDDTAEKVHEAVGEELDDEDFEDAEDAEDSDDSDEDED
EDEDEDSDDSDEDEIDLDNDDDEEDDDIEVLDDEDSDEDEDSDEDEDSDEDSDEDSDEDS
DDEDEPEVIAVPVRRPRRRAAARPAGPPSSE
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacagtgaaaatactcaagcccaagactcgccggactcttcagaagaggcttcg
cctcgcgaaagacttcccgaacgcctgagggtgcactcactggcccgggtgctgggcacc
accagccggcgggtcctcgacgcactggccgaactcgacggccgcgctcgcagcgcgcac
tcgaccgtcgacaagaccgaggccgagcgggtccgcgaagtgctcgccggcagcgacggg
gacgcccccgtcgaagccccggcgcccgcggagatcgccgagtcggtcgccgatgccccc
gaggtggtcatcgagacggtcgagtcggtcgaggtcacgatcgacgtggctcccgtcggc
gacacctctgacgtgccggaacccgaggacgagccggaatcgcggacgatcctcgagacg
gcccccgtcgagcgggcggactacctgccgctgttcgtcgcaccccagccggtgcggttc
gagcccgccgacgaggacgacgacgaagacgaggacgacgacgtcgccgcgtcggccgac
agcgaggacgacgacgaggacgaccagtcggagcggcccgccgcgcggcgccgccggcgg
ggacgccgcggccggggccgggggcgcggcgaacagagcgacgacaacggggagcccgac
gccgccgagggcaccgagacgaagaccgacggacaggccgactccgatcaggacaccggc
gacgactccgacgaggacggcgacgaggacacctcgggtggcgacggcagttcgcggagg
cgtcgccgccggcgtcggcgcaagtccggcgcgtcggacgactccgacaacggttcaccc
gacgacccgccgaacaccgtcgtgcacgaacgcccgccgcgtgagcggggtggcaagtcc
ggcgacagcgacgacaacgagatccagggcatcagcggctcgacccggctggaagccaag
cggcagcgccgtcgcgacggtcgggacgccggacgccgccgcccgccgatcctgtcggag
gccgagttcctcgcccgccgcgaggccgtcgaacgcgtcatggtggtgcgcgacaaggtc
cgcaccgaaccgccccacgagggtgcgcgctacacccagatcgcggtgctcgaggacggg
gtcgtcgtcgaacacttcgtgacgtcgccggcctcggcgtccctggtcggcaacatctac
ctgggcatcgtgcagaacgtgctcccgtcgatggaggccgcgttcgtcgacatcggtcgc
ggtcgcaacggcgtgctctacgccggtgaggtgaactgggaggccgcgggtctcggcggg
cagaaccgcaagatcgagcaggcgctcaaacccggcgactacgtcgtcgtgcaggtcagc
aaggatccggtcgggcacaagggtgcccgcctgaccacgcaggtgtcgctggccggccgt
tacctggtgtacgtgccgggtgcgtcgtcgaccgggatcagccgcaagctgcccgacacc
gagcggcaacggctcaaggagatcctgcgcgaagtggtgcccgccgacgccggcgtgatc
atccgcaccgcgtcggagggcgtgaaggaagacgacatccgctccgacgtgaaccggttg
caggagcgctggacacagatcgaggccaaggccgccgagatcaccgcgaagaaggccggc
gccgccgtcgcgctctacgaagagcccgacgtgctggtcaaggtgatccgcgatctgttc
aacgaggacttctccgggctgatcgtctcgggtgacgaggcgtggaacaccatcaactcc
tacgtcgagtccgtggcgcccgacctgatgccgcggctgaccaagtacgaaccggcaggc
aaccccaacggcgagggtccggacgtgttcgccgtgcaccgcatcgacgaacaactcgcc
aaggccatggaccgcaaggtgtggctgccgtcgggcgggacgctggtcatcgaccgcacc
gaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccgggtcgggcggcaacctc
gagcagacggtcacccgcaacaatctcgaagcggccgaggagatcgtgcgccaactgcgg
ttgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtgctcgagtcgaac
cgcgatctggtgttgcggcggctgaccgaggcgctggcccgtgaccgcacccgccaccag
gtgtccgaggtgacctcgctgggtctggtgcagctgacgcgtaagcggctgggcaccggg
ctgatcgaggccttctccaccccgtgtccgcactgtgcggggcgcggcatcgtgctgcac
ggcgatccgatcgacaacgcctcgggtaacgggcgcaagtccgagccggggacgggcagg
cgcagcaagcgcggcaagaagggcggtaagcccgaggaggcgcccgcggccgtgccggtg
atcaaggtgccgccgcaccccgccggtgagcacccgatgttcaaggcgatggccgccgcg
aacggccgcgacgacgagtccgaggacgagtccgacgagtcggccgatgagcagtccggt
gcgcgcgaggacgacaccgccgagaaggtgcacgaggccgtcggtgaagaactcgacgac
gaggacttcgaggacgcggaggacgcggaggactccgacgattccgatgaggatgaggat
gaggacgaggacgaggattccgacgactccgatgaggacgagatcgacctcgacaacgac
gacgacgaagaggacgacgacatcgaggtcctcgacgacgaggattccgacgaggacgag
gattccgacgaggacgaggattctgacgaggattccgacgaagactccgatgaggactcc
gatgacgaggacgaacccgaggtgatcgcggtcccggtgcggcgtccgcgccgacgcgcc
gccgcacgtccggcgggtccgcccagcagcgagtag
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