Mycobacterium kansasii ATCC 12478: MKAN_05340
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Entry
MKAN_05340 CDS
T02887
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mkn
Mycobacterium kansasii ATCC 12478
Pathway
mkn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mkn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKAN_05340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mkn03019
]
MKAN_05340
03009 Ribosome biogenesis [BR:
mkn03009
]
MKAN_05340
Enzymes [BR:
mkn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MKAN_05340
Messenger RNA biogenesis [BR:
mkn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKAN_05340
Ribosome biogenesis [BR:
mkn03009
]
Prokaryotic type
rRNA processing factors
MKAN_05340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AGZ49771
UniProt:
U5WPD3
LinkDB
All DBs
Position
complement(1202920..1205820)
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AA seq
966 aa
AA seq
DB search
MLDALNALDGRIRSAHSSVDRVDAVRVRDLLAETPIEEPANEPNQAKPEENAELGVAAAA
VAPGEADDEADDEADYEADYEADEAPEPESRLLLETQETVQVVETWVERPHYLPLFVAPQ
PIPEAIDEDNGTDDEAADDSDDDDEHEQIDRPSGRRRRRGRRGRGRGRGEQGGSDGPGED
DGDEADRKANGDSARSDDSESDDAADSDDTDTDAGDDDNGSAEGASRRRRRRRRRKSGSG
EDGDEGPAPDDPPNTVVHERAPRNGGAGDEESGSNEIKGIDGSTRLEAKRQRRRDGRDAG
RRRPPVLTEAEFLARREAVERVMVVRDRVRTEPPHPGTRYTQIAVLEDGIVVEHFVTSAA
SASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWDAAGLGGADRKIEQALKP
GDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILRE
VVPSDAGVIIRTASEGVKEGDIRADVTRLQERWQQIEAKAAEVKQKAAGAAVALYEEPDV
LVKVIRDLFNEDFAGLIVSGDEAWTTINDYVNSVAPDLVSKLTKYEPAELAEGQTRPDVF
AVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKNNLE
AAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLV
QLTRKRLGTGLIEAFSSSCPQCSGRGILLHADPVDAAPATGRKSESGGRRNRRSKKSRAE
EPSDKGIVAKVPAHAPGEHPMFKAMAAGSSLGPGRGDGEPEESGEEFAAAIDEETAVAVS
DGIDDLEEDADNAGEPDDIEDFEDTDEEDTDEEDTDEDADEDTDEDEELDDEELDDDELD
DDDLGDDDLDDELDVDDSDTDDDDTDSEPADSPDGPPGPVEVASLPERPRRRRAAGRPAG
PPIHVD
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgatgccctcaacgcgctggacggtcgtatccgcagcgcacattccagcgtggac
cgggtcgacgcagtccgggtgcgcgacctgctggccgaaacgcccatcgaagaacccgcc
aacgaacccaaccaagccaaaccagaagaaaacgctgaactcggtgtcgccgcggcggct
gtcgcaccgggcgaagctgacgacgaagctgacgacgaagctgactacgaagctgactac
gaggctgacgaggccccggaacccgaatcccggctgctgctggaaacgcaggaaacggtg
caggtcgtcgagacgtgggtggagcggccgcattacctgccgctgttcgtcgcgccgcag
ccgattcccgaggcgatcgatgaggacaacggcaccgacgacgaggcagccgacgattcc
gatgatgacgacgaacatgagcagatcgaccggccgagcggtcggcggcgtcggcgtggc
cgtcgtggccgtggtcggggacgcggtgaacagggtggatccgacggccccggcgaagat
gacggcgacgaagccgaccggaaagcgaatggggactctgcccgttccgacgactccgaa
agtgacgatgcagcggactccgacgacaccgacaccgacgccggcgacgatgacaacggc
tcagcagagggcgccagccgtcgtcgccgccgccgcagacgacgcaagtcgggttccgga
gaggacggcgacgagggcccagcgcccgacgatccgcccaacaccgtcgtgcacgaacgc
gcgccccgcaacggcggcgccggggacgaagagtccggcagcaacgagatcaagggcatc
gacggctcgacccggctggaagccaaacggcaacgccgccgggacggccgcgacgccggg
cggcgccgtccaccggtactgaccgaggccgaattcctggccagacgagaggccgtcgag
cgagtcatggttgtgcgtgaccgggtccgcaccgagccgccgcacccgggcacgcgctac
acccagatcgcggtgctcgaagacggcatcgtggtcgagcatttcgtgacttccgcggct
tcggcttccctggtgggcaacatctacctgggcatcgtgcagaacgtgttgccgtcgatg
gaggcggccttcgtcgacatcggtcgcggccgcaacggtgtgctctacgcgggtgaagtc
aactgggacgcagccggactcggtggggccgaccgcaagatcgaacaggccctcaaaccc
ggcgactacgtcgtcgtccaggtcagcaaggacccggtgggccacaagggagcacggctg
acgacgcaggtgtcgctggccggccgctatctggtctacgtgccgggcgcgtcgtcgacc
gggatcagccgcaagctgcccgacaccgaacgccagcggctcaaggagatcctgcgcgag
gtggtgccgtccgacgcgggagtgatcatccgcaccgcgtccgagggggtcaaagagggc
gacattcgtgccgacgtcacccggttgcaggagcgctggcaacagatcgaagccaaggcc
gccgaggtcaagcagaaggcggccggcgctgcggtggcgctctacgaagaaccggatgtg
ctggtcaaggtcatccgcgacttgttcaacgaggattttgccgggctcatcgtttccggc
gacgaggcctggaccacgatcaacgactacgtgaattccgttgcgcccgatctggtttcg
aaattgaccaagtacgagccggccgagcttgctgaaggtcagacgcgccccgacgtcttt
gcggtgcatcgtatcgacgagcagctgacgaaggcgatggaccgcaaggtgtggctgccg
tcgggcgggacattggtgatcgaccggaccgaggccatgacggtgatcgacgtcaacacc
ggcaaattcaccgggtcggggggcaatctcgagcagaccgtcaccaagaacaacctggag
gcggccgaggagatcgtgcgtcagctgcgcctgcgtgacatcggcggcatcgtggtcatc
gacttcatcgacatggtgctggaatcgaaccgcgacctggtgctgcgccggctgaccgag
gcgctggcccgcgaccgcacccgtcaccaggtgtccgaggtgacctcgctgggcttggtc
cagctcacccgcaaacgtttgggaaccggcctgatcgaggccttctcgtcgtcgtgtccc
cagtgcagcgggcgtgggatcctgctgcatgccgatccggtggatgctgcgccggcgacc
gggcgaaagtcggaatccggaggccggcgcaacaggcgctcgaagaagagtcgcgccgaa
gagcccagtgacaaagggatcgtggccaaggtccccgctcacgcccccggcgagcatccg
atgttcaaagcgatggcagcgggctcgtccctgggacccggccgtggggacggggaaccc
gaggagtccggtgaggagttcgcggccgcgatcgacgaagaaactgcggtggcggtgtcc
gacggcatagatgatctcgaagaagacgcagacaacgccggtgagcccgacgacatcgaa
gacttcgaggacaccgacgaagaagacaccgatgaagaggacaccgacgaagatgccgac
gaggacaccgacgaggacgaagaactcgacgacgaggagctcgatgacgacgagctcgac
gacgacgacctcggtgatgacgacctcgatgacgagctcgacgtcgatgattccgacacc
gacgacgacgacaccgattccgagcccgccgacagtcccgatggcccgccgggacccgtc
gaggtggcatcgttgccggaacgtccgcggcggcgacgagcggcgggcaggccggccggt
ccgccgatccatgtggactga
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