Mycobacterium kansasii ATCC 12478: MKAN_24070
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Entry
MKAN_24070 CDS
T02887
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mkn
Mycobacterium kansasii ATCC 12478
Pathway
mkn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MKAN_24070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkn03400
]
MKAN_24070
Enzymes [BR:
mkn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
MKAN_24070
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
MKAN_24070
DNA repair and recombination proteins [BR:
mkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MKAN_24070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
NFACT_N
DUF7573
DUF5830
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AGZ53030
UniProt:
U5WY99
LinkDB
All DBs
Position
5318337..5319188
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AA seq
283 aa
AA seq
DB search
MPELPEVEVVRRGLAAHVVGKTMTAVRVHHPRAVRRHEAGPADLTARLLGARITGTDRRG
KYLWLTLNSPDSALVVHLGMSGQMLLGVVPRSDHVRISALLDDGTVLSFADQRTFGGWLL
ADLVTVDGSVVPAPVAHLARDPLDPRFDARAVVEVLRGKHSELKRQLLNQEVVSGIGNIY
ADEALWRAKVNGARVAATLTRRQLGAVLDAAAEVMREALAKGGTSFDSLYVNVNGESGYF
DRSLDAYGRDGQNCRRCGAVIRREKFMNRSSFYCPRCQPRPRR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactacctgaggtcgaggtggtgcggcgtggcttggcggcccatgtggtaggc
aagacgatgaccgcggttcgggtccatcacccccgtgcggtacggcgccacgaggccgga
cccgccgacctgacggcgcggctgctgggcgcgcgaattaccggaaccgaccggcgcggc
aagtacttgtggttgacgctgaatagcccggatagcgcacttgtggtgcacctgggcatg
agcgggcagatgttgctgggggtagtgccgcgctccgaccacgtccggatctccgccctg
ctcgacgacgggaccgtgctgagcttcgccgaccagcgcaccttcggcggatggctgctt
gccgacctggtgaccgtggacggcagtgtggtgccggcgccggtcgcccacctggcgcgg
gatccgctcgacccgcggttcgacgcccgtgccgtcgtcgaagtgttgcggggcaagcat
tccgagctcaagcgccagctcctgaaccaagaggtggtctccggaatcggcaatatctac
gccgacgaggcgctgtggcgggccaaggtgaacggcgcccgggtggccgccacgctgacc
cgccggcaactgggcgccgtccttgatgccgccgccgaggtgatgcgggaagcgctggcc
aagggcgggacgtcgttcgattcgctgtatgtcaatgtcaacggcgagtcgggctatttc
gaccgatcgctggacgcctatgggcgcgacggccagaactgccggcgctgcggcgcggtg
attcgccgggagaagttcatgaaccgctcgtcgttctactgtccccgatgccagccgcgg
ccgcggcgttag
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