Methylomonas koyamae: MKLM6_0373
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Entry
MKLM6_0373 CDS
T05118
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mko
Methylomonas koyamae
Pathway
mko03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MKLM6_0373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mko03400
]
MKLM6_0373
Enzymes [BR:
mko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MKLM6_0373
DNA repair and recombination proteins [BR:
mko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MKLM6_0373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
ResIII
DEAD
Motif
Other DBs
NCBI-ProteinID:
ATG88652
UniProt:
A0A291IEA5
LinkDB
All DBs
Position
414749..418264
Genome browser
AA seq
1171 aa
AA seq
DB search
MAIKAFDAVGGALETGINLIEASAGTGKTYTIAMLVLRFVVERELDIKQLLVVTFTKAAS
EELKERIRARLAEARRILLNPAAGDDPAVTGWLGGLALDQNRIRQRLELALLDIDQAAIF
TIHGFCQRVLAEHALESGQLFDCELSGDVAELKLQCADDFWRRQIYQRPLWQAALLTQTY
PTPDALLQSVLRIDLQQNAYPQDTDLEAELAALPSLRAEAAAALPAAAAALNNAFADGCF
TPSFADGFSARVEALVAWLQDPDHDLPDFDCLNPATLLAGLNGNKFRAGKTKPLSAEQQK
QQYLDSLNIYCAPFQALADAMRRLPVAFRAALLASLRAELDRRLLRENVLSFDDLITRLA
AALDGDNGALLAAELRLRFRAALIDEFQDTDAKQWRIFSGVFASAEHYLYLIGDPKQAIY
KFRGADIFSYFAAQQRADRRYTLLHNWRSHPHLVQAVNGLFLREKPFLFDALDFTPVMAG
RQPGDGSIAGGAPLVLWQLDKNPGKQEHWTARKGGSGEVSARVLQAVVGEIRHLLAAGRI
AEEHGNERPVQARDIAVLVRSNAVAADYQQALLQVGIPAVLNSKQSVFASAQAFELYYVL
NAVAAAGQVNVLKQALATPWFGLDGQQLYRLSRDEAELDAWVSRFQDYLQCWRNQGLLAM
VQQLLRRERVEQHLSAQTQAERVLTNIHHLAERLQQAAIDEHLAINKTLDWLRRAIQQSA
QDSGEDRQLRLESDEDAVKIVTLHSSKGLEYPLVFCPDLWRRSDRLKTETALVQCHEHGA
MVADLGSAQFGERREQALFEELAEDLRLFYVALTRAKYRCYLNWADVRTKERANDSAMAY
LFEFADCDFAGQQRVLQALAAAEPDLFEYRLLPAAAAGEPAELSGVRRDPELPLAYRSQT
RSLHSIWQMSSYTALAALSLDQAPELPADKAEESHDRPAADEALPRGAHTGNVIHSLLET
VAFADLAAGRDIGRASAQACLRYGLKLAQPQLLGEVLYRVAATPLEDDAGFCLMHLDPAQ
CIKEMPFYLSMPSRVDTARINQALAACPAYQALDAKQISGYLTGFIDLVCCYGGRYYVMD
YKTNALADYAPSSLLQAMREHNYGLQYWLYSLVLHEYLGQRLPDYDYARHFGGVKYLFVR
GMHPDRPASGVFADRPEPDRLAELAEVFFRA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcgattaaggccttcgacgcggtcggcggtgcgctggaaaccggcatcaacttgatc
gaagccagtgctggcaccggcaagacttacaccatcgcgatgctggtgctgcgctttgtc
gtcgaacgcgaactcgacatcaagcaactgctggtcgtcaccttcaccaaggccgccagc
gaagaactgaaggagcgtattcgcgcccgcctggccgaagcccggcgcatcctgctgaat
ccggcggcgggcgacgatccggccgtcaccggctggctcggcgggctggccctggaccaa
aaccgtatccgccaacgcctggagctggcgctgctcgatatcgaccaggcggcaatcttc
acgatccacggcttctgccagcgggtgttggcggaacacgcattggaaagcggccagttg
ttcgattgcgaattgagcggcgatgtggccgaattgaaattgcagtgcgccgacgacttt
tggcgccggcaaatctaccaacgcccgctctggcaagcggcgttactcacccaaacctat
ccgacccccgatgcgttgctacagagcgtgctccgtatcgatctgcagcaaaacgcttat
ccgcaggacaccgacctcgaggccgaactggcagcgctgccgagtttgcgcgcagaggcc
gccgcagctttgccggcggcggccgcagccttgaataacgctttcgccgacggctgtttt
accccaagtttcgctgacgggttttccgctcgggtcgaggccctggtcgcttggctgcaa
gacccggaccacgatttgccggatttcgactgcctgaatccggccacgctgttggccggc
ctgaacggcaataaattccgcgccggcaaaaccaagccgctgtctgccgaacaacaaaag
caacaatacctggacagtctgaacatctattgcgcgccgtttcaagcgctggccgatgcg
atgcggcggctgccggtcgcgtttcgcgccgcactgctggccagcttgcgcgccgaactg
gaccggcgcctgctgcgggaaaacgtgctgtccttcgacgatttgattacccggctggcg
gccgcgctggacggcgacaacggcgccttgttggcggcggaattgcgcttgcgtttccgg
gcggcgttgatcgacgaatttcaggacaccgacgccaagcaatggcgcattttttccggc
gtgtttgccagtgcggaacattacctatatctgatcggcgatccgaagcaggcgatttac
aaattccgcggcgccgatattttttcctacttcgccgcccaacaacgcgccgaccggcgc
tacaccttactgcacaactggcgctcgcatccgcatctggtgcaggccgtgaacggctta
ttcctccgcgaaaaaccgtttttgttcgatgccttggatttcacgccggtcatggccggc
cgccaacccggcgacggcagcattgccggcggcgcgccgctggtcttgtggcagctcgat
aagaatcccggcaagcaggaacattggaccgcgcgcaaaggcggctcgggcgaagtctcg
gcgcgggtgctacaggccgtggtcggcgaaatccgccacttgctggcggcaggccgcatc
gccgaagagcacggtaacgagcggccggtacaagctcgggacatcgcggttctggtccgc
agcaacgccgttgccgccgactaccagcaggcgctgctgcaagtcggcataccggcagta
ttgaacagcaagcaatcggtgttcgcctcggcgcaagccttcgagttgtactacgtgttg
aacgcagtggccgccgccggccaggttaacgtgttgaaacaggctttggcgacgccgtgg
ttcggtttggacggccaacaactgtaccggctgagccgcgacgaagcggagctggacgcg
tgggtgtcgcgttttcaggactatctacagtgctggcgcaaccagggcctgctggcgatg
gtgcaacaactgctgcggcgggaacgggtcgaacaacatttgtcggcacaaacccaagcg
gaacgggtgttgaccaatatccaccatttggccgaacgcctgcagcaggcggccatcgac
gagcatctggcgatcaacaagacgctggactggctgcggcgggcgatccagcaatcggcg
caagacagcggcgaagaccgccaattgcggctggaaagcgacgaggacgcggtcaagatc
gtcacgctgcacagctccaagggcctggagtatccgctggtgttctgccccgacctgtgg
cggcgcagcgaccgcttgaaaaccgaaaccgccttggtgcaatgccacgaacacggggcg
atggtcgccgatttgggctcggcacaattcggcgaacgccgcgaacaagccttgttcgaa
gaattggccgaggatttgcgcttgttttacgtggcgctaacccgagccaagtaccgctgc
tacctgaattgggccgacgtccgcaccaaggaacgggccaacgattcggcgatggcttat
ttattcgaattcgccgactgcgatttcgccggccagcagcgtgtgctgcaagcgctggct
gccgccgaaccggatttattcgagtatcgcctgctgccggccgcagcggccggcgagccg
gccgaattgtccggcgtgcgccgcgatccggaattgccgttggcttaccgcagccaaact
cgcagcttgcacagcatctggcagatgagcagctacaccgctctggccgcgctgagtctg
gaccaggcgccggaactgccggccgataaagccgaagaaagccacgaccggccggccgcc
gacgaggccctgccgcgcggtgcccacaccggcaacgtgatccacagcctgctggagacc
gtcgcctttgccgatttggccgcaggccgcgacatcggccgcgccagcgcccaagcctgc
ctgcgctacggtctgaagctggcgcaaccgcaactattaggcgaggtgctgtaccgcgtg
gccgccacgccgctggaagacgatgccgggttttgcctgatgcatctggacccggcgcag
tgcatcaaggaaatgccgttttacttgtccatgccaagtagggtggacaccgctcgcatc
aaccaagcattggccgcctgtccggcctaccaggcgctggatgccaagcaaatcagcggc
tatctgaccggcttcatcgatctggtctgttgttacggcggccgctactacgtcatggat
tacaaaaccaacgctttggccgactacgcgccgtcgagcctgctgcaggccatgcgcgaa
cacaattacggcctgcaatattggctgtacagcctggtccttcacgaatacctgggccaa
cgtctgccggattacgattacgcccgccatttcggcggcgtcaaatacctgttcgtacgc
ggcatgcatcccgaccgcccggccagcggcgtgttcgccgaccgcccggaaccagatcgg
ctcgccgagttggccgaggtgttttttcgagcctaa
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