Methylomonas koyamae: MKLM6_3095
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Entry
MKLM6_3095 CDS
T05118
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mko
Methylomonas koyamae
Pathway
mko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKLM6_3095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mko03019
]
MKLM6_3095
03016 Transfer RNA biogenesis [BR:
mko03016
]
MKLM6_3095
Enzymes [BR:
mko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MKLM6_3095
Messenger RNA biogenesis [BR:
mko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKLM6_3095
Transfer RNA biogenesis [BR:
mko03016
]
Prokaryotic type
tRNA degradation factors
MKLM6_3095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
LexA_DNA_bind
CSD
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ATG91294
LinkDB
All DBs
Position
complement(3509501..3511819)
Genome browser
AA seq
772 aa
AA seq
DB search
MTTNSDQPADFSTFVDPHAEREAEKYENPIPSRELILELIQQAGKPLRRQQIAQQFGLES
ADAQEALRRRLRAMERDGQLSFNSRQKYCIGSGHNTIAGRILGHPDGFGFLKPDDGSEDL
FLSPREMKPLMPNDRVIARVSGVDRRGRREAAVIEITERNTHQIVGRFFSEGRVAYVVPD
NKKINHEVLIAKEDVGSAKNGQIVVAEILQQPSSHCQPIGRIAEVLGLHMAPGMEIEMAI
RSYDLPNQWPEALLAEIKALKPEVPEEAKQGREDIRQLPLVTIDGEDARDFDDAVYAQKT
PKGWRLLVAIADVSHYVKVGTALDDEAKSRSTSVYFPEKVIPMLPEILSNGLCSLNPAVD
RLCMVCELLISSEGLVLRSRFFEAVMRSHARLTYSAVAKMLVEGDQKLIKKHQELMPHLQ
TLYDLYKVMRQQRELRGAMDFDTQETKIVFGPERKIAEIVPLVRNDAHKLIEEFMITANT
AAARFLNRKKMPRLLRIHDGPSAEKLLALKTFLNELGLHLGGKAEPTPLDYMHLLESVQQ
RPDAHLIQTLLLRSMSQAVYSPETKGHFGLALDAYAHFTSPIRRYPDLLVHRAIRHCLAG
HKPDTFHYSHDDMVVLGEHCSANERRADDATRDVVSWLKCEYMMDKIGEEFAGVISAVTG
FGFFVELQAIYVEGLVHIASLQDDYFNFDSGKHQLYGERSGIRYRLGDSVRIRVIRVSLD
DKKIDFELVQAGKKAKTKAAPAKESGKKKAKKSKAEPAKSNAKAKSRRRRRS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaatagcgatcaacccgctgatttttcgactttcgtcgatccgcacgccgag
cgcgaagcggaaaaatacgagaacccgatacccagccgcgaactgattctggagctgatc
cagcaggccggcaaaccgttaagacgccaacaaattgcccagcaattcggcctggaatcg
gccgatgcccaggaggccttgcgccgcaggctgcgcgcaatggaacgcgacggccaattg
agctttaacagccggcaaaaatattgtatcggttccggacacaacacgattgccggccga
atcctcggccatccggacggcttcggcttccttaagccggacgacggcagcgaagacttg
ttcttgtcgccgcgggaaatgaagccgttgatgccgaacgaccgggtgatcgctcgcgtc
agcggcgtcgaccgccgcggccggcgcgaggccgcggtgatcgaaatcaccgaacgcaat
acgcatcaaatcgtcggccgttttttcagcgagggccgcgtcgcttacgtggtgccggac
aacaagaagatcaaccacgaagtgttgatcgccaaggaggatgtcggcagcgccaagaac
ggccagatcgtcgtcgccgaaatcctgcagcagcccagttcgcattgccaaccgatcggc
cgcatcgccgaagtgttgggtctgcacatggcgccgggcatggaaatcgaaatggcgatt
cgttcttacgacttgccgaaccagtggccggaagccctgttagcggaaatcaaggccttg
aagccggaagtgccggaagaagccaagcaaggtcgggaagacattcgccaattgccgctg
gtgacgatagacggcgaagacgcccgcgacttcgacgacgcggtttacgcccaaaaaacg
ccgaaaggttggaggttgctggtggcgatagccgacgtgtcgcattacgtcaaagtcggc
accgcgttggacgacgaagcgaagagccgcagtacttcggtgtatttcccggaaaaagtg
attccgatgctgccggagattctgtccaacggcctgtgttcgttgaatccggccgtggat
cgcttgtgtatggtctgcgagctgttgatcagcagcgaaggcctggtattgcgctcgcgc
ttcttcgaagcggtgatgcgctcccacgcccgtttgacctacagtgctgtggccaaaatg
ttggtcgaaggcgatcaaaagctgatcaaaaagcatcaggaactgatgccgcatctgcag
acgttatacgatctgtacaaagtcatgcgccagcagcgcgaactgcgcggggcgatggat
ttcgatacacaggaaaccaaaatcgtgttcggtcccgagcgcaagattgccgagatcgtg
ccgttggtgcgcaacgatgcccataaattgatcgaagaattcatgatcaccgccaacacc
gcggcggcccgtttcctgaaccgcaaaaaaatgcccaggctgttgcggattcacgatggt
ccgagcgcggaaaaattgctggcgctgaaaacctttctgaacgaattgggcctgcatctg
ggcggcaaggccgagccgacgccgttggactatatgcatctgttggaatcggtacagcaa
cgcccggacgcccacctgattcagaccttgctgctgcgttcgatgtcgcaggcggtctat
agtccggaaaccaaaggccatttcggcttggcgctggatgcctacgcccatttcacctcg
ccgatccggcgttatcccgatctgttggtgcaccgggcgattcggcattgtctggccggc
cataaaccggacacctttcattacagccatgacgatatggtggtactgggcgaacactgt
tcggccaacgaacgccgggccgacgacgccacccgcgacgtggtcagttggctgaaatgc
gaatacatgatggacaagatcggcgaggagtttgccggggtgatttccgcagtcaccggc
ttcggcttcttcgtcgaattgcaggccatctatgtcgaaggcttggtgcatatcgcctcg
ctgcaggacgactatttcaatttcgactccggcaaacaccagctttacggcgaacgcagc
ggtatccgctaccgtttgggcgacagcgtgcgcatccgcgtgatccgcgtcagtctggac
gataagaaaatcgacttcgaattggtgcaggccggtaaaaaagccaaaactaaagccgca
cccgccaaggaaagcggcaagaagaaggccaagaagtccaaagccgagccggcaaaatcc
aacgctaaagccaaatccagaagacgccgccgctcatga
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