Methylomonas koyamae: MKLM6_3819
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Entry
MKLM6_3819 CDS
T05118
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mko
Methylomonas koyamae
Pathway
mko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MKLM6_3819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mko03400
]
MKLM6_3819
Enzymes [BR:
mko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MKLM6_3819
DNA repair and recombination proteins [BR:
mko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MKLM6_3819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
ATG92000
UniProt:
A0A291IP48
LinkDB
All DBs
Position
4318579..4322025
Genome browser
AA seq
1148 aa
AA seq
DB search
MTASPLCLPELPKQSAQVQIWRGLAGCGDALALANAIAGEKRLAVIVTPDTQTALRLEHE
LAFFLDNAFPILQFPDWETLPYDVFSPLPEIVSERLRTLALLPETKRGALIVPISTLMHR
LAPREHILAHSFAIEVGGSLNLDLTRAKLEAVGYQCVSQVYQHGEFAVRGSILDLFPMGS
KQPYRIELFDDDVESIRSFDPDTQMSQDKMQKVELFPAREFPFTDEAIKRFRQAFREQFP
DASPKNNLYLDVSKQIAPAGIEYYLPLFVERTESLFDYLPKTALFVLPAEFETGAGQFYA
EAEERYQQRKYDIDRPLLPPQRLFLSADELVGKTGSFSRIVLDYQGEHGESLHCQALPDV
AIDSRLKEPAQRLRQFIEGFAGKILFVAETAGHREGLIEKLKSVKLTVKHVQSWPEFLQG
DESPCIVVAPMDHGLLLEEPPLAIVTESQLSGEKVQQRRRRTKSAARALENIFNNLDELT
IGSPVVHQEHGVGRYLGLQTLTVGGIEAEFLMLEYAGGDKIYVPVASLHLIGRYSGVSAE
NAPLHKLGTEQWSKAKQKAMARARDVAAELLDIHAKRAARGGFAFNVGDADYNAFAAAFP
FEETPDQLSAIDAILQDMASPQPMDRVVCGDVGFGKTEVAMRAAFVAVQSGKQVAVLVPT
TLLAQQHYQNFRDRFADWPVRIEVTSRFVTAKQQNAIADDLAEGKVDIVIGTHKLLSKEM
KYKALGLVIIDEEHRFGVTQKEHFKKLRSELDLLTLTATPIPRTLNMAMSGLRDISIIAT
PPPNRHAIKTFVSEWIDSQVQEACQREIKRGGQVFFLHNDVKTMDKMMRELAELVPEARI
QIAHGQMAERELEQIMLDFYHQRFNLLIATTIIESGIDIPSANTIVINRADKLGLAQLHQ
LRGRVGRSHHRAYCYCIVPPKTLMTKDAIKRLEAFETSGELGAGFMLSSHDMEIRGAGEL
LGDEQSGQIQEIGFTLYTELLERAVKALKSGKQPELDAPLDYGPEVDLQVATLIPEDYLP
DIHARLVLYKRIASAETEEDLRKLKIEMIDRFGLLPDQVKALFAVTELKQQAAHLGIRKI
EAHASGGRIVFTATPQIDTGELILMVQSQSQVYKFDGADKLRFTQTFKDMEDKVAFLAKL
LTRLAPKS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcctctccgctatgcctccccgaattaccgaaacaaagcgcacaggtgcaaatc
tggcgcggcctagccggctgcggcgatgctttagcgctggccaacgcgatcgccggcgaa
aaacgcctggccgtcatcgtcacgccggacacgcaaaccgcgttgcgcctggaacacgaa
ttggcctttttcctcgataacgcattccctatcctgcaattcccggactgggaaaccctg
ccctacgacgtgttttcgccgctgccggaaatcgtttccgaacgtctgcgcacgctggcc
ttattaccggaaaccaagcgcggcgcgctgatcgtgccgatctcgacgctaatgcaccgg
ctggcgccgcgcgagcacatcctcgcccatagtttcgccatcgaagtcggcggcagcttg
aacctagatctgactcgcgccaagctggaggcggtgggctaccaatgcgtgtctcaggtc
taccaacacggcgaattcgcggtacgcggttcgattctggacctgttcccgatgggttcg
aaacagccctaccgcatcgaactgttcgacgacgacgtagaatcgatccgcagcttcgat
cccgatacgcaaatgtcgcaagacaaaatgcaaaaggtcgagttgtttcccgctcgcgaa
tttccgtttaccgacgaagcaatcaaacgcttccgccaggccttccgcgaacaattcccg
gacgcgtcgccgaagaacaacctgtacctcgacgtttccaagcaaatcgccccggccggt
atcgagtactacttgccgctgttcgtcgagcgcaccgaatcgctgttcgattatttacct
aagactgcgctattcgtgttgccggccgagttcgaaaccggcgccggccagttctacgcc
gaagccgaagagcgttaccaacaacgcaaatacgacatcgatagaccgctgctgccgcca
caacgcttgttcttatccgccgacgagttggttggcaaaaccggcagtttcagccggatc
gtgctggactaccagggcgaacacggcgaatcgctgcattgccaagcattgcccgatgtc
gcgatcgatagccgcctgaaagaaccggcgcaacgcctgcgccagtttatcgaaggcttt
gccggcaaaattctgttcgtcgccgaaaccgccggccaccgcgaaggcctgatcgaaaaa
ctgaaaagcgtcaagctcaccgtcaaacacgtccagagctggccggaatttctgcaaggc
gacgagtcgccgtgtatcgtcgtcgcgccgatggaccacgggctgttgctcgaagaacca
cctctggccatcgtcaccgagagccagctcagcggcgaaaaagtccagcagcgccggcgc
cggaccaagtccgcggctcgggcgctggaaaacatattcaataacctcgacgaattgacc
atcggctcgccggtggtgcaccaggaacacggcgtcggccgttacctgggcttgcagacc
ttgaccgtcggcggcatcgaagccgagttcctgatgctggaatacgctggcggcgacaag
atttacgtgccggtagcctccctgcatttgatcggccgctattccggcgtcagcgccgaa
aacgcgccgctgcacaaactcggcaccgagcaatggagcaaagccaagcaaaaagccatg
gcgcgggcgcgcgacgtggccgccgagttgctcgacatccatgccaagcgcgcggcgcgc
ggcggctttgccttcaatgtcggcgacgccgattacaatgccttcgctgccgccttcccg
ttcgaggaaacgcccgatcagctcagtgccatcgacgccattctgcaggatatggcctcg
ccgcagccgatggatcgagtggtgtgcggcgacgtcggcttcggcaagaccgaagtggcg
atgcgcgcggctttcgtagcggtgcaaagcggcaaacaggtcgcggtgctggtgcccacc
accctgctcgcccaacagcattaccagaatttccgcgaccgcttcgccgactggccggtg
cgcatcgaagtcacctcgcgcttcgtcaccgccaagcagcaaaatgcaatcgctgacgat
ctggccgaaggcaaggtcgacattgtgatcggcacccacaaattgctgtccaaggaaatg
aagtacaaagccttgggcctggtaatcatcgacgaagaacaccgtttcggcgttactcag
aaagagcatttcaagaagctgcgctccgaactggacttgttgacgctaaccgcgacgccg
atcccaagaacgttgaatatggctatgtccggcctgcgcgacatttccatcatcgccacg
ccgccgccgaatcgccacgccatcaagactttcgtcagcgaatggatagactcgcaagtg
caggaagcctgccagcgcgaaatcaagcgcggtggtcaggtattcttcctgcacaacgac
gtcaagaccatggacaagatgatgcgcgagctggccgaactggtgccggaagcgcggatt
cagatcgcccacggccagatggcggaacgcgagctggagcagatcatgctggatttttac
caccagcgcttcaacctgctgatcgccacgaccattatcgagagcggcatcgacatcccc
agcgccaacaccatcgtcatcaaccgcgccgataagttgggtctggcccagttgcaccag
ttgcgcggtcgggtcggccggtcgcaccatcgcgcctattgctattgcatcgtgccgccg
aaaaccttgatgaccaaggacgccatcaagcgcctggaagccttcgaaacttcgggcgaa
ctcggcgccggtttcatgctgtcctcgcacgacatggagattcgcggcgccggcgagttg
ctaggcgacgagcaaagcggccagattcaagaaatcggctttaccttgtacaccgaactg
ttggaacgcgcggtcaaggctttgaaatccggcaaacaaccggaattggacgcgccgctg
gattacggcccggaagtggacttgcaagttgccacgttgattccggaagattatttgccg
gacatccacgcccgactggtgttgtacaaacgcatcgccagcgccgaaaccgaagaggat
ttgcgcaaactcaaaatcgaaatgatcgaccgtttcggcctgttgccggatcaggtcaaa
gctttgttcgcggtcaccgaactgaaacaacaagcggctcacttgggcatcaggaaaatc
gaagcccacgccagcggcggccgcatcgtcttcaccgccacgccgcagatcgataccggc
gagttgattttgatggtgcaaagccagtcgcaggtttataaattcgatggcgccgataaa
ttacgctttacccagacctttaaggatatggaagataaggtggcatttttggcgaagttg
ttgactaggttggcgccgaaatcataa
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integrated database retrieval system
