Methylomonas koyamae: MKLM6_3844
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Entry
MKLM6_3844 CDS
T05118
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mko
Methylomonas koyamae
Pathway
mko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKLM6_3844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mko03019
]
MKLM6_3844
03009 Ribosome biogenesis [BR:
mko03009
]
MKLM6_3844
Enzymes [BR:
mko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MKLM6_3844
Messenger RNA biogenesis [BR:
mko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MKLM6_3844
Ribosome biogenesis [BR:
mko03009
]
Prokaryotic type
rRNA processing factors
MKLM6_3844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ATG92023
UniProt:
A0A291IP36
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All DBs
Position
4344371..4346578
Genome browser
AA seq
735 aa
AA seq
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MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPFKEIAPEYRTGDGQEGKPSSKSNIREGQEIVVQIEKEERGNKGAALTTYIS
LAGTYLVLMPNNPKAGGISRRIEGDNRSELRETMAALEIPDSMGLIIRTAGSDKNVEELQ
WDLNYLLQLWEAIDRSSTEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAFKLVH
NFLKQVMPHNLHKAKLYQDSVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSI
DINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENR
LRDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLA
VLRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRAAIQEIESRLQVGIIVLPSKHLETPA
YDIERIKAIGDSEEKASHLQIKEEDITVPEFAKQLGPKTEKAAIKEFLPDSPAPVQSKKT
SASLIQRFWQRLIGAGKTVETDEVGEKSGEDKTKPGRNNRRDRGERGERGAGRNNNRRSG
NRRPANQPPAAAGQETAPNLNDDAKPVAASSELESGADNAAKRAPGAAPDRERSRRSRSR
RRGPRNGAEKRGEPNLNGADGEAPQASEYIPPAAVDSGEGHNQPRSYNREFAERNQRPAE
DSRQDHEPVRTAAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcagcccgaagagctgcgggtggcattggtagat
ggccagaaactttacgatttcgacatcgaagttccatcgaaagaacaaaaaaaatccaat
atttataaaggcatcatcacccgggtagaacccagcctcgaagccgccttcgtcaactac
ggcgccgaaaaacacggattcctgccgttcaaggaaatcgccccggaataccgcaccggc
gacggccaggaaggcaaaccatccagcaaaagcaatatccgcgaaggccaggaaattgtc
gttcaaatcgaaaaagaagaacgcggcaacaaaggcgcggcgctaacaacctacatcagt
ctggccggcacctatctggtgctgatgccaaacaaccccaaagccggcggcatttcccgg
cgtatcgaaggcgacaaccgcagcgaattgcgcgaaaccatggccgccctggaaattccg
gacagcatgggcttaatcatccgcaccgccggctccgacaaaaacgtcgaagaactgcaa
tgggacttgaactacctactgcaactgtgggaagccatcgaccgctccagcaccgagcaa
accgcaccgttcctgattttccaggaaagcaacgtgatcatccgcgccttgcgcgatcac
ttgcgcggcgacatcgacgaaatcctgattgaccaggaaggcgccttcaaactggtgcat
aacttcctgaaacaggtgatgccgcataatctgcacaaggccaaactgtaccaggacagc
gtgccgctgttcagccgctaccagatcgaaacccagatcgagatggcgtataagcgcgaa
gtgtcgctgccgtccggcggctccatcgtcatcgaccacaccgaggccctgacatcgata
gacattaactcggcccgcgccaccaagggcagcgacatcgaggaaaccgcgctgaacacc
aacttggaagcggccgacgaaatcgcccgccaattgcgtctgcgcgacttgggcggcctg
ttcgtcatcgacttcatcgacatgatgtccaacaaaaaccagcgcgaagtggaaaaccgc
ttacgcgatgcgttaaaaatcgaccgcgctcgtatccagaccggccgcatctcccgcttc
ggcttgatggaaatgtcgcgccaacgcttgcggccgtctttgggcgattcgacccaattg
acctgcccgcgctgcaaaggccaaggcacgatccgtaacgtcgaatcggtcacgctggcc
gtgctgcgcttgatcgaagaagaagcgatgaaaaaaggcaccgagcgcgtcatcgcccac
ttgccgatcgattgcgctaccttcctgctcaacgaaaaacgcgcggcgattcaggaaatc
gaatcccggctgcaagtcggcattatcgtgctgccgagcaagcatctggaaacgccggcc
tacgacatcgagcggatcaaagccatcggcgacagcgaagaaaaagccagccatttgcaa
atcaaagaagaagacatcacggtgccggaattcgccaaacaactgggcccgaaaaccgaa
aaagccgcgatcaaggaatttctgccggattcgccggcaccggtacagagcaaaaagact
tcggccagcctgatacagcgcttctggcaacgcctgatcggcgccggcaagaccgttgaa
accgacgaagtcggcgaaaaaagcggcgaagacaaaaccaaacccggccgcaataatcgc
cgcgaccgtggcgagcgcggtgaacgtggcgccggccgtaacaacaaccgccgcagcggt
aaccgccgtccggcgaatcagccacccgcagcggctggccaggaaaccgcacccaacctg
aacgacgacgccaaaccggtggcggcaagctccgaactcgaatccggagccgataacgct
gcgaaaagggccccaggcgcggcgccggaccgggaacgcagccgccgcagccgtagccgc
cgccgcggcccgcgcaacggtgccgagaaacgcggcgaaccaaacctgaacggagcggac
ggcgaagcgccgcaagccagcgaatatatcccgccggccgccgtcgacagcggagaaggc
cacaatcagccgcgctcgtataaccgcgagtttgccgagcggaatcaacgcccggccgag
gacagccggcaagaccacgaacccgtcagaacagccgccgaagaataa
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