Mycolicibacillus koreensis: MKOR_22960
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Entry
MKOR_22960 CDS
T06447
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mkr
Mycolicibacillus koreensis
Pathway
mkr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mkr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MKOR_22960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mkr03021
]
MKOR_22960 (rpoC)
03400 DNA repair and recombination proteins [BR:
mkr03400
]
MKOR_22960 (rpoC)
Enzymes [BR:
mkr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MKOR_22960 (rpoC)
Transcription machinery [BR:
mkr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MKOR_22960 (rpoC)
DNA repair and recombination proteins [BR:
mkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MKOR_22960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBY55045
LinkDB
All DBs
Position
complement(2312154..2316104)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMGVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIIDESI
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEIEGETGEYT
PAAKDAPESGVYSSPAEAIMAADRGALSVRATIKVRLTDQRPPVEVETELFGENGWRPGD
AWTTETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDAYEERADKVEKQFQRGALNRDERTEALVEIWKE
ATEEVGNALREHYPSDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGITVE
LAERQPDGTLIRDPFIETSAYARTLAVDAVDDSGTVIVEAGHDLGDPAIEAALAAGITAV
KVRSVLTCATGTGVCALCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVAGRIRLEEDERFYKITIIPDDGGEELVYDKL
SKRQRLKVYKHDDGSERLLADGDHVDVGQQLLEGSADPHEVLRVQGPREVQVHLVKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVMAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLEGLKENVIIGKLIPA
GTGISRYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGTATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgaatcggtctggccaccgccgaggacatt
cggcaatggtcctacggcgaggtgaagaagccggagaccatcaactaccgcaccctcaag
ccggagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgtgagcgctgcggcgtg
gaggtcacccgcgccaaggtgcgccgtgagcgcatgggccacatcgagttggccgccccg
gtcacccacatctggtacttcaagggtgtgccgagccggctcggttacctgctggacctg
gcgccgaaggatctggaaaagatcatctacttcgccgcctacgtgatcaccgcggtcgac
gacgagatgcggcacaacgagctgtcgaccctcgaagccgagatgggcgtggagcgcaag
gccgtcgaggaccagcgtgacgccgacctggaggcccgggcgcagaagctcgaagccgac
ctcgccgagctggaggccgagggagccaaggccgacgcgcggcgcaaggtgcgtgacggc
ggtgagcgcgagatgcgtcagctgcgtgaccgtgcccagcgcgaactggaccggctcgag
gagatctggaccacgttcaccaagctggcccccaagcagctcatcatcgacgagagcatc
taccgcgagctcgtcgaccgctatggcgagtacttcaccggcgcgatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggcggagtcgctgcgcgacgtc
atcaaaaacggcaagggccagaagaagctgcgggcgctcaagcgtctcaaagtggttgcg
gcgttccagcagtcgggcaactcgccgatgggcatggtgctcgacgcggttccggtgatc
ccgccggagctgcgccccatggtgcagctcgacggtggccggttcgccacctccgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccggctcaagcgtctgatggacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcc
ttgttcgacaacggtcgtcgcggccggccggtcaccggcccgggcaaccgcccgctgaag
tcgctctccgatctgctcaagggcaagcagggacgcttccgtcagaacctgctcggtaag
cgtgtcgactactcgggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcactcgagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgccagcgc
ccccaggtgtgggacgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcgcccaccctgcaccgtctgggtatccaggccttcgagccgcagctggtggagggcaag
gcgattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccgcatcctgatgttg
tcgagcaacaacatcctgtcgccggcgtcgggccggccgctggccatgccgcgtctggac
atggtgaccgggttgtattacctgaccaccgagatcgagggtgagaccggcgaatacacc
ccggcggccaaggacgccccggaatccggtgtgtactcctcgccggccgaggcgatcatg
gccgccgaccgcggcgcgctgtcggtgcgggccacgatcaaggtgcgcctgaccgaccag
cgtccgccggtcgaggtggagaccgagctcttcggtgagaacgggtggcgccccggcgac
gcctggaccaccgagaccacgctggggcgggtgctgttcaacgagctgctgccggtcggg
tacccgttcgtcaacaagcagatgcacaaaaaggtgcaggccgcgatcatcaacgatctc
gccgagcgctacccgatgatcgtcgtcgcccagaccgtcgacaagctcaaagacgccggg
ttctactgggccacccgcagtggtgtcaccgtctccatggccgacgtgctcgtgccgccg
cgcaagaaggagatcctcgacgcctacgaggagcgggccgacaaggtcgaaaagcagttc
cagcgtggggcgctcaaccgcgacgagcgcaccgaggcgctggtggagatctggaaggaa
gcgaccgaggaggtcggtaacgcgctgcgggagcactacccgagcgacaacccgatcatc
acgatcgtggagtccggcgccaccggtaacttcacccagacccgcaccctggccgggatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccgatcaagtccagcttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggtgcccgtaagggtctg
gccgacaccgcgctgcgcaccgccgactccggttacctgacccgtcgtctggtcgacgtg
tcgcaggacgtgatcgtgcgcgagcacgactgtggcaccgagcgcggcatcaccgtcgag
ctcgccgagcgccagcccgacggcacgctgatccgggacccgttcatcgagacctcggcg
tacgcacggacattggccgtcgacgccgtcgacgacagcggcaccgtcatcgtcgaggcc
ggccacgacctcggcgacccggcgatcgaggcggcgctggccgccggcatcaccgcggtg
aaggtgcgttcggtgctgacctgcgccaccggcaccggggtgtgcgcgctgtgctacggc
cgctcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgccgcc
cagtccatcggtgagccgggcacgcagctgaccatgcgcaccttccaccagggtggtgtc
ggtgaggacatcaccggtggtctgccgcgcgtgcaggagctgttcgaggcccgggtgccg
cgcggcaaggcgccgatcgccgacgtcgccgggcgcatccgcctggaggaggatgagcgg
ttctacaagatcacgatcatccccgacgacggcggtgaggagctggtctacgacaagctg
tccaagcgtcagcggctgaaggtctacaagcacgatgacggttccgagcggctcctggcc
gacggcgaccacgtcgatgtgggtcagcagctgctggagggctccgccgacccgcacgag
gtgctgcgcgtgcagggcccgcgggaggtgcaggtccacctggtcaaggaggtccaggag
gtctaccgcgcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgtcgggtgacgatcatcgactccggttccaccgagttcctgcccgggtcgctg
accgagcgggcggagttcgaggccgagaaccgtcgggtgatggccgagggtggggagccc
gccgccggtcgtccggtgctgatggggatcaccaaggcgagcctcgccaccgactcgtgg
ctgtccgcggcatcgttccaggagaccacccgggtgctcaccgacgcggcgatcaactgc
cgcagcgaccgcctcgagggcctgaaggagaacgtgatcatcgggaagctgatcccggcc
gggaccggaatcagccgctaccgcgacatccaggtgcagcccaccgaggaggctcgggcc
gctgcgtacacgatcccgtcgtacgaagatcagtactacagcccggacttcggcaccgcc
accggtgccgccgtgcccctggacgactacggctactccgactaccggtaa
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