Mycolicibacillus koreensis: MKOR_39780
Help
Entry
MKOR_39780 CDS
T06447
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mkr
Mycolicibacillus koreensis
Pathway
mkr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MKOR_39780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkr03400
]
MKOR_39780 (mfd)
Enzymes [BR:
mkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MKOR_39780 (mfd)
DNA repair and recombination proteins [BR:
mkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MKOR_39780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
LSDAT_prok
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBY56727
UniProt:
A0A7I7SID6
LinkDB
All DBs
Position
4019644..4023315
Genome browser
AA seq
1223 aa
AA seq
DB search
MTSPGQPRPATPLAGLVELALSAPVFTELAATAGAAPARRDLVGPASARLFVAAALARAT
PVLVVTATGREADDLTAELRAVLGDAAALFPSWETLPHERLSPGVDTVGARMLVLRRLAR
PDDPALGPPLQVVVTTARSLLQPMVAGLGDIEPVTMRVGAETPFDEIITRLVELAYTRVD
MVGRRGEFAVRGGILDVFPPTAEHPVRVEFFGDEVTEMRLFSVADQRSIPDIEVDALVAV
PCRELLLTDAVRARAADLAGVQPSTDTAITGGVGDLLAKLADGIPTDGMEALLPVLHPDA
LTLLTGELPAGAAVLVCDPEKVRTRAADLITTGREFLEASWSVAALGADAPIDVEQLGGS
GFVDLAEVIAAAEAGGHPWWTLSQLHDPDAVELDVRAAPTARDRQGGLTGLESLFAMLRA
HIATGGVAAVVTPGIGTARRTVEQLSESNTPATVLEPGATPAPGAVAVLAGPLHDGVIVS
GAELVILTEADLTGNRATAPTGKRLAAKRRNTVDPLALSAGDLVVHDQHGIGKFVEMTER
TVGGARREYVVLEYASAKRGGTDKLTDKLYVPMDSLDQLSRYVGGQTPALSRLGGSDWTN
TKTKARRAVAEIATELVALYAKRQAAPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV
KADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLADQHLQTFTER
MAGFPVTVKGLSRFTDATDSRATIDGMADGSVDIVIGTHRLLQTAVRWKDLGLIIVDEEQ
RFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGA
HDDKQIAAALRRELLRDGQAFYVHNRVRSIDEAAARVRALVPEARVAVAHGQMPEELLES
TVQAFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRGRERGYA
YFLYPRESPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF
DLYVRLVGEAVEAYRAAADGQTVLTEEPKEVRIDLPVDAHLPPDYIDSDRLRLEAYRRLA
AAVDDAAVGGVVEELTDRYGPLPTPARLLVAVARLRLLCRGHGVTEVATVSETTLRLAPL
VLPDSAQVRLKRVYPGARYRATTATVAVPIPRSGAGVGSPRLRDLELVQMVADLLTALDG
KPAGSVDITAEGVPVGSGGAGEG
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgacctccccggggcagccccgcccagccaccccgctcgccggcctggtcgagctggcg
ctgtccgcacccgttttcaccgagctggccgcgaccgcgggcgccgcgcccgcgcgccgc
gacctcgtcggcccggccagcgcacggctgttcgtcgcggccgcactcgcccgggccacc
ccggtgctggtggtcaccgcgaccggccgcgaggccgacgacctcaccgccgagctgcgc
gcggtcctcggtgacgccgcggcgctgttcccgtcctgggagacccttccccacgagcgg
ctctccccgggggtggacaccgtcggggcgcgcatgctggtgctgcgccggctggcccgc
cccgacgaccccgccctgggcccgccgctgcaggtggtggtgaccaccgcgcgctcgctg
ttgcagccgatggtcgccgggctcggtgacatcgagccggtcacgatgcgcgtcggcgcc
gagaccccgttcgacgagatcatcacccggctggtggagctggcctacacccgcgtcgac
atggtcgggcggcgcggggagttcgcggtgcgcggcggcatcctcgacgtgttcccgccg
accgccgagcacccggtgcgcgtcgagttcttcggcgacgaggtcaccgagatgcggctg
ttctccgtggccgatcagcgctcgatccccgacatcgaggtcgacgcgctcgtcgcggtc
ccgtgccgggaactgctgctgaccgacgcggtgcgggcacgggcggccgacctggccggg
gtgcagccgagcaccgacaccgcgatcaccggcggggtgggcgacctgctggccaagctg
gccgacggcatccccaccgacggcatggaggcgttgctgccggtgctgcaccccgacgcg
ctgaccctgctcaccggtgagctgcccgccggggcggcggtgctggtctgcgacccggag
aaggtccgcacccgcgctgccgacctgatcaccaccggacgggagttcctggaggcgtcc
tggtcggtggccgccctcggcgcggacgccccgatcgacgtcgaacagctcggcggatcc
gggttcgtcgacctcgccgaggtgatcgccgccgccgaggccggcgggcacccgtggtgg
acgctgagccagctgcacgatcccgacgccgtcgagctcgacgtgcgcgccgcgcccacc
gcccgcgaccgccagggcggactgaccgggctcgagtcgctgttcgcgatgctgcgcgcc
cacatcgcgaccggcggggtggccgcggtggtcacccccggcatcggcaccgcgcggcgc
accgtggaacaactcagcgaatccaacactccggcaacggtattggagcctggcgctacc
cccgcccccggcgcggtggcggtgctggccggcccgctgcacgacggggtgatcgtctcc
ggcgccgagctggtcatcctcaccgaggccgacctgaccggcaaccgcgccaccgcgccg
accggcaaacggctggcggccaagcgccgcaacaccgtcgacccgctggcgctgagcgcc
ggcgacctggtggtccacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgc
accgtcggcggggcgcgccgcgaatacgtggtgctcgaatacgcctcggccaaacgcggt
ggcaccgacaagctcaccgacaagctctacgtgccgatggactccctcgaccagctctcc
cgctacgtcggcggccagaccccggcgctgtcccgcctcggcggcagcgactggaccaac
accaagaccaaggcgcggcgcgcggtcgccgagatcgccaccgaactcgtcgcgctctac
gccaaacgccaggccgcccccggccacgcgttcgccccggacaccccctggcaggccgag
atggaggacgcgttcgggttcaccgagaccgtcgaccagctcaccgcgatcaccgaggtc
aaagccgacatggagaagccggtgccgatggaccgggtgatctgcggcgacgtcggctac
ggcaagaccgagatcgcggtgcgcgcggcgttcaaggccgtgcaggacggccgacaggtc
gcggtgctggtgcccaccacgctgctggccgaccagcacctgcagacgttcaccgagcgg
atggccgggttcccggtcaccgtcaagggcctgtcgcggttcaccgacgccaccgactca
cgcgccaccatcgacgggatggccgacgggtcggtcgacatcgtcatcggcacccaccgg
cttttgcagaccgcggtgcgatggaaggacctcgggctgatcatcgtcgacgaggagcaa
cgcttcggcgtcgaacacaaggaacacatcaaggcgctgcgcagccacgtcgacgtgctg
acgatgagcgcgacccccatcccgcgcaccctggagatgagcctggccggcatccgggag
atgtcgacgatcctcaccccgcccgaggagcgctacccggtgctgacctacgtcggcgcc
cacgacgacaagcagatcgccgcggcgctgcgccgcgagctgctgcgcgacgggcaggcg
ttctacgtgcacaaccgggtgcgctcgatcgacgaggccgccgcccgggtgcgcgcgctg
gtcccggaggcccgggtggcggtggcccacggccagatgcccgaagagctgctggaatcg
accgtgcaggcgttctggaaccgcgagcacgacatcctggtgtgcacgacgatcgtggag
accgggctggacatctccaacgccaacaccctgatcgtcgaacgggccgacaccttcggc
ctctcccagctgcaccagctgcgcggacgggtcggccgcggccgggaacgcggttacgcc
tacttcctgtatccgcgggagagcccgctgaccgagaccgcccacgaccggctggccacc
atcgcccagaacaacgagctgggtgcgggcatggcggtggcgatgaaggacctggagatc
cgcggggcgggcaacgtgctcggcgtcgaacagtccgggcacgtcgccggggtcgggttc
gatctgtacgtgcggctggtcggcgaggccgtcgaggcctaccgcgcggccgccgacggg
cagaccgtgctcaccgaggaacccaaggaggtgcgcatcgacctgcccgtcgacgcccac
ctgccgccggactacatcgacagcgaccggctgcgcctggaggcctaccggcggttggcc
gccgccgtcgacgacgccgcggtcggcggggtcgtcgaggagctcaccgaccgctacggg
ccgctgcccaccccggcgcggctgctggtggcggtggcccggctgcggctgctgtgccgc
ggccacggggtcaccgaggtcgcgacggtctcggagaccacgctgcggctggcgccgctg
gtgttgccggactccgcgcaggtgcggctcaaacgcgtctacccgggggcgcggtaccgg
gcgaccaccgccaccgtcgcggtgccgatcccgcgatccggggccggggtgggctcgccg
cggctgcgggatctggagctcgtccagatggtcgccgacctgctcaccgcattggacggc
aaaccggccggttcggttgatataaccgcggagggtgtcccggtcggatccgggggcgcc
ggagaggggtaa
DBGET
integrated database retrieval system
