Mycobacterium kubicae: I2456_14370
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Entry
I2456_14370 CDS
T07774
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mku
Mycobacterium kubicae
Brite
KEGG Orthology (KO) [BR:
mku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mku03019
]
I2456_14370 (hrpA)
Enzymes [BR:
mku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I2456_14370 (hrpA)
Messenger RNA biogenesis [BR:
mku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I2456_14370 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
nSTAND_NTPase5
T2SSE
AAA_25
PhoH
ABC_tran
SLFN-g3_helicase
TsaE
Motif
Other DBs
NCBI-ProteinID:
QPI35792
UniProt:
A0AAX1J3T1
LinkDB
All DBs
Position
3059507..3063448
Genome browser
AA seq
1313 aa
AA seq
DB search
MAELSVSGLRKQLDGLTSADAARLGRRLKNLRGANPAKLQQLADQISRAQALVATRQAAV
PSVTYPDLPVSERRHEIAEALRAHQVVVVAGETGSGKTTQLPKICLDIGRGIRGTIGHTQ
PRRLAARTVAQRIADELATPLGEAVGYSVRFTDQVSERTLIKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPQRFAAHFGGAPIVEV
SGRTYPVEIRYRPLEVPVLSDTREDSRDPDDPDREIVRTETRDEIEAIVDAIGELEAEPP
GDVLVFLSGEREIRDTAEALTGLRHTEVLPLYARLPTAEQQKVFAPHTGRRVVLATNVAE
TSLTVPGIRYVVDPGNARISRYSRRLKVQRLPIEPISQASAAQRAGRSGRVAPGVCIRLY
SEEDFAARPRYTEPEILRTNLAAVILQMAALQLGEVENFPFLDPPDRRSIRDGVQLLQEL
GAFDQQGTITDLGRRLARLPVDPRLGRMILQADVEGCVREVLVLAAALTIPDPRERPADR
EEAARAQHARFADETSDFLSYLNLWRYLREQRQTLSRSAFRRMCRNEYLHFLRIREWQDL
VGQLRSIARDLGINESDEPADAAVVHAALLAGLLSHVGMRREDGREYLGARNSRFVLAPG
SVLTKRPPRWVVVAELVETSRLYGRTAARIQPEVVERVAGDRVQRTYSEPHWDAQRGEVL
AYERVTLYGLPLVARRRVGYGRIEPAVARELFIRHALVEGDWQTRHHFFRDNARLRAELE
ELEERARRRDLLIGDDEVYGLYDARIPAEVVSARHFDAWWKKQRHRTPDLLTFTREDLLR
ADDSAGDDRPDTWQAGDITLPLTYRFEPGAADDGVTVHVPIDVLSRLGGDDFAWQVPALR
EELVTALIRSLPKDLRRNFVPAPDTARAVLTGIDPSKEPLLEALQRELRRRTGVLVPIDA
FDVEKLPPHLRVSFIVESPDGSEVARGKDLTALQERLAKPARQAVAHAVAGELERTGLRG
WPDDLDQLPHVVERRVDGRVVRGFPAFLDAGSTVALRVFATSAEQDHAMGPGLRRLVRLS
VPSPAKAIQRQLDPRTRLTLGANPDGSLSALIEDCADAATDALMPEPAWTRDEFAAIRHR
VGQNLVPTTLDLVSRVEKVLAAAHEVRLVLPGKAPPAQAEAIADVRAQLDALLAPGFVTT
TGRARLTDLARYLTAMRRRLDRLPFAPEADRERLQRVRAVQRAYDELLRALSPARRTATE
VRDIGWQIEELRVSLWAQQLGTPRPVSEQRIYRAIEASTTTFLEPTDAIASPE
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaactgtccgtctccggactgcgcaagcagctagacgggctgaccagtgcggac
gcggcgcgcctgggccggcgcctgaaaaacctgcgcggtgccaacccggcaaagctgcag
cagctcgccgaccagatctcccgagcgcaggcgctcgtcgccactcggcaagccgccgtc
ccgtcggtcacctatcctgacctgccggtcagtgaacgccggcacgagatcgccgaagcg
ctgcgggcacatcaagtggtggtcgtcgccggcgagaccgggtcgggcaagaccacccag
ctgcccaagatctgcctggacatcggccggggaatccgcggcaccatcgggcacacccag
ccgcggcggctggccgcccgcacggtcgcgcaacgcatcgccgacgaactggcgaccccg
ttgggcgaggcggtgggctacagcgtccgtttcaccgaccaggtcagtgagcgcaccctg
atcaagctgatgaccgacgggatcctgctcgccgagatccagcgcgaccggcggctgctg
cgctacgacacattgatcctggacgaggcccacgagcgcagcctcaacatcgacttcctg
ctgggctacctgcgcgagctgttgccgcgccgcccggacctgaaagtgatcgtcacttcg
gcgaccatcgaaccgcaacgattcgccgctcacttcggcggagcaccgatcgtcgaggtc
tccggccggacgtacccggtcgagatccgctaccgacccctggaagtgccggtgctgtcc
gacacccgggaagactcccgcgaccccgacgatcccgatcgcgagatcgtgcgcaccgag
acccgggacgagatcgaggcgatcgtcgacgccatcggtgaactcgaggccgaaccgccc
ggcgatgtgctggtgttcctgtccggggagcgcgagatccgcgacaccgccgaggcgctg
accggcctcaggcacaccgaggtactcccgctgtacgcccggctgccgaccgccgagcaa
caaaaagtgttcgcgccacacaccggccgccgcgtggtgctggccaccaacgtcgccgag
acctcactgaccgtgcccgggatccgctacgtcgtcgacccgggcaacgcccgcatttcg
cgctacagccgccggctcaaagtgcagcggttacccatcgagccgatctctcaggcgtcg
gccgcccagcgggccgggagatcgggccgcgtcgcacccggcgtgtgcatccggctgtac
tccgaggaggacttcgcggcccgcccgcgctacaccgaacccgagattctgcgcaccaac
ctcgccgcggtgatcctgcagatggcggccctgcagctcggcgaggtagagaacttcccc
ttcctcgatccgccggaccggcgcagcatccgcgacggcgtgcagctgctgcaggaattg
ggtgccttcgatcagcagggcaccatcaccgacctcgggcgtcgcctggcccggctgccc
gtcgacccgaggctggggcggatgatcctgcaggccgacgtagagggatgtgtgcgcgaa
gtgctggtgttggccgcggcgctgaccatccccgacccgcgcgagcgcccagccgatcgg
gaagaagccgcccgcgcgcagcacgcccgcttcgccgacgagacctcggacttcctgtcc
tacctcaacctctggcgctacctgcgcgagcagcgacagacgctgtcgcgcagcgcgttt
cggcgcatgtgccgcaacgagtacctgcacttcctgcggatccgggagtggcaggacctg
gtcgggcagctgcgcagcatcgcccgcgacctgggcatcaacgaatccgacgaaccggcg
gacgcggctgtggtccacgcggcgctgctggccggactgctctcgcacgtgggtatgcgc
cgcgaggacggccgggagtacctcggcgcgcgcaattcgcggttcgtcctggcgcccggc
tcggtgctcaccaagcgcccgccccgctgggtagtggtggccgaattggtcgagacgagc
cgcctgtacggccggaccgccgcccgcatccaacccgaggtcgtcgaacgggtcgcgggt
gatcgcgtgcagcgcacctacagcgagccacattgggacgcccagcgcggcgaagtgctc
gcctacgaacgggtcacgctgtacggcctgccgctggtcgcgcgccgccgcgtcggctac
ggccgtatcgagccggcggtggcgcgggaactgttcatccgccacgccctggtcgaaggc
gattggcagacccgccaccacttcttccgcgacaacgcccggctgcgcgcggaactcgaa
gaactcgaggagcgggcccgccgtcgcgacctgctgatcggtgacgacgaggtctacggg
ctgtacgacgcccgcatccccgccgaggtggtctccgcgcgccacttcgacgcctggtgg
aaaaagcagcggcaccgcacccccgacctgctgaccttcacccgcgaggacttgctgcgt
gccgacgacagcgcaggcgacgaccgcccggacacctggcaggcgggtgacatcaccctg
ccgctgacctaccggttcgagcccggcgccgccgacgacggcgtcacggtgcatgtgccg
atcgacgtgctttcccgcctgggtggcgacgacttcgcctggcaggtgccggcgctgcgc
gaggaactggtcaccgcgctgatccgctcactgccgaaagacttgcggcgcaacttcgtt
cctgcccccgacaccgcccgcgccgtgctcaccggcatcgaccccagcaaggagccgctg
ctggaagccctgcagcgcgaattgcgccgccgcaccggcgtgttggtgcccatcgatgcc
tttgatgtggagaagctgccaccgcatctgcgggtgagcttcatcgtcgagtctcctgac
ggcagtgaagtcgcccgcggtaaggacctcacggcgctgcaggagcggctggcgaaaccg
gcgcggcaggccgtggcccacgctgtcgccggtgaactggaacggaccgggttgcgcggc
tggccggacgacctcgatcagctgccgcatgtcgtcgagcgccgggttgacggacgggtg
gtgcgggggtttcctgctttcctcgacgcgggcagcacggttgccttgcgggtgttcgcc
acatcggcagagcaggatcacgcgatgggtccggggctgcgccggctggtgcggctgagt
gtgccgtcacccgcgaaagccattcaacgccaactggatccacgaactcgcctgaccttg
ggcgccaacccggacggctcgctgtcggcgttgatcgaggactgcgccgacgccgcgacc
gatgcgctgatgcccgagccggcgtggacgcgcgacgagttcgccgcgatacgtcatcgg
gtcgggcaaaatctggtgccgacgaccctggacctggtgtcgcgcgtcgagaaggtgttg
gccgccgcgcatgaggtgcgcttggtgctgcccgggaaagccccgcccgcgcaggccgag
gcgatcgctgacgtccgagcgcaactggacgcgcttttggcgcccggtttcgtcaccacc
accggccgcgcccgcctgaccgacctggctcgctacctgacggccatgcgacggcgtctg
gaccggttgccgttcgcgccggaggccgatcgggaaaggctgcagcgggtgcgagccgtg
cagcgcgcgtatgacgaactgctgcgcgcgttgtccccggcgcggcgaaccgccaccgag
gtccgcgacatcggttggcagatcgaggaactgcgggtcagcctgtgggctcagcagctc
ggcacaccgcgcccggtcagcgagcagcggatctaccgggcgatcgaggcgtccacgacc
acttttcttgagccgaccgatgccatagcgtcgccggagtga
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