Mycobacterium kubicae: I2456_17205
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Entry
I2456_17205 CDS
T07774
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mku
Mycobacterium kubicae
Pathway
mku03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mku00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I2456_17205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mku03019
]
I2456_17205
03400 DNA repair and recombination proteins [BR:
mku03400
]
I2456_17205
Enzymes [BR:
mku01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I2456_17205
Messenger RNA biogenesis [BR:
mku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I2456_17205
DNA repair and recombination proteins [BR:
mku03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I2456_17205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
QPI40792
UniProt:
A0AAX1JJW4
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All DBs
Position
3653261..3654820
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AA seq
519 aa
AA seq
DB search
MRAVLNGRDVLAVMPTGSGKSAIYQVPTLLMDGVTLVVSPLIALQHDQIAAIDDCGAGKA
VAVNSGLRAAQLRRNWEAIDRGDAKFIFISPEQLANDEVVQRLSAVELSLLVVDEAHCVS
AWGHDFRPDYRRLADVFRQLGESIPVVALTATASVVVRRDIVDRLGFHNPSIVVGGFDRP
NLSLTVERHLDEDDKRTAVLDTVPTLQGPGLLYVATRKDAEFYAQGLRDKGIAAAAYHAG
MAKADRDRVHEGFRDDDYEVVVATSAFGMGIDKPNVRFVVHASIPDSLDSYYQQIGRAGR
DGEDACALLLYRPEDLGLARFFTTGSPDEELLEAVYNALDTQRPTKPKDLRAKLDIPGRR
LTNGINLLDESGAIRSTRKGLLSGKLPAAEAVAEAVHMVELRERVDQSRIEMMRGYSETD
SCRRIFLLSYFGEYLAQPCGNCDCCEQAAELGDLTAEGPAIPVDTAVQHRQWGPGVVIGG
DRERVTVLFDEFGYRTLSMAAVRDHGLLEVSTSAHPETA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcggtgctgaatgggcgcgacgtacttgcggtgatgccgacggggtctgggaag
tcggcgatctaccaggtgcccaccctgctgatggatggtgtgacgctggtcgtctcaccg
ctgattgcgctgcaacacgaccagatagcggccatcgacgactgcggcgccgggaaggcg
gtggcggtcaactccggcctgcgcgctgcccagttgcggcgcaactgggaagccatcgat
cggggcgacgcaaagttcatcttcatatcgcccgagcagttggccaatgacgaagtggtg
caacggctcagtgcggtcgagctgtcgctgttggtggttgacgaggcgcactgcgtctcc
gcgtggggacacgacttccggcccgactaccgacggcttgccgacgtattccgtcagcta
ggcgaatcgatcccggtcgtcgcgcttaccgcaaccgcgtcggtggtggtgcgccgtgac
atcgtggatcggctcgggtttcacaatccgtccattgtggtcggcggttttgaccggccc
aacctgtccttgacggtcgagcgtcacctggacgaagacgacaagcgcaccgcggtgctc
gacacagtgcccaccctgcagggacccggcctgctgtatgtggccacccgcaaggacgcg
gagttctacgcccagggcctgcgagacaagggaattgccgcggcggcctaccacgccggc
atggcgaaggccgaccgcgaccgggtgcacgaaggtttccgcgacgatgactacgaggta
gtggtggcgacctccgcgttcggaatgggtatcgacaagcccaatgtgcggttcgtcgta
cacgcctcgatccccgattcgctggatagctattaccagcaaatcgggcgggcgggccgc
gatggcgaggacgcgtgcgcgttgttgttatatcggcccgaagacctcggcctggctcgg
ttcttcaccacaggcagcccggacgaggagcttttggaagcggtgtacaacgcgttggac
acccaacgccccaccaaaccgaaagacttgcgggccaagcttgatattcccggccgcaga
ttgaccaacggcatcaacctgctcgacgagtcaggcgcgatccgatccacccgcaaggga
ttgctgagcggcaagctgccggcggcggaggcggtcgccgaagccgttcacatggtggaa
ttgcgcgaacgggtagatcagagccggatcgagatgatgcgcgggtactccgagaccgat
tcttgccgaaggatcttcttactctcctatttcggtgagtatctggcgcagccctgcgga
aactgtgactgctgcgaacaggccgccgagctcggagacctcaccgcggaaggcccagcg
atccctgtggacaccgcggtgcagcatcggcaatgggggccgggcgtcgtgatcggcggc
gaccgcgaacgcgttaccgtgttgttcgacgaattcggttatcgcacattgtcgatggcc
gcggtgcgcgaccacgggctgctggaggtgtcgacatccgcccaccccgaaacggcgtga
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